G94972


Basic Information

Item Value
gene id G94972
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3062554 ~ 3070931 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108072
TTGTGGGGTTTTCGAAGCGTCAACTTTTGGATTACTATCCACTTGCAAGACTCCCAGAGATGGATCATTTTCTAAAAATCTCCATTTGTGTTCCACAGAAGAATCTGGGATAGCATGAGGCTGAGTAAATGATAAGAGAATTTTCATTTTTGGGTGGAGTATCCATTTAAGTATTCGATTAGGAGGGTGTAGTTCATTCAATTCATGGTAGAACTTTCAAAGCTTGAAATGTGTGGACTTACCTAAACCTCTCCTGACCAGCTGTATCCCAGAATTGCAGCTTGACCCTCACCCCAGGTTCGACCTCTAGAAAGTGTACATAGAAGTCTACTCCGACAGTCTGGTTGATGCACTCCAGAAACAGGTCCTCTGTGTATCGCTTCAACATGGATGACTTGCCCACCGTGGAGTCTCCTAGCATGATGATTCGAAACTGGTACTGCCACAAAGTGAGATCCATGACTCACTGAGAACCAAACCAACGTGATAAATGAAAAGGCTAGAGTTCACTAAAAACTGTCACTCCACCAGGATCCTTGGATGTCTGACCAGAGAACCCCTTACCTTAGAGGAATTGAAGTTCTCATGTTAAATAAACCCATAGTTCCTTAGGTTCTCCTGTGTTTTTCTGTAAAGAGCAGCATCTGTGTGAATGTTTTAGGGGTGGGAGCGTCTACTTGATCTGTTTCTTTAATCTTTGCCTGTTCATACTTGTTAGTGGGCAGGGTTTATGTGAGGGGAGGAGTTTATAAAGGCCAGCAGAAAGTTTGGAATTTCTCATAGATCAGAGGGAATGAGCATGCAGTATCATATCAGGACAAGCCCAGCATTTCCTGTTGAGACCAGCTAGTGGCATGCATCACATAAAAGCACATGTAATGAGCAAAAACATTTCAGCTAAGACTTTCTGAATAAGCCAACCATGAGAATGCTTCCACCCAGTTCATAACCTCTGAAGATGGCTGGAAGACTTCCAATGTCATGATGAAATCAAGCCCAATATTCCTCACCGATGTGCATTACAGCTCTCATGCAAGTGCACTTCTCCACTCAGATAGCCCTGATAAATACGCCGGGTCAACAGTTCAAAAGCTTCTACCACATTGTGGCCTGTTTTGGCCGAGGCCTCTGTGTGGTGCTCCCAATTTACTGGCAAACTCTTCCTCCTCATCTTGATTCATCTTCCGCTCTCTTCTGTCACACTTTTGTCCCACAAGAATAAAGATGTGAATTGAATGTTCATTTCTCTACCATAAGCCGTCTCCAAAGCCGTTTCAGAGAATTTGGCAGTACATCCATCCGGCCTCACAACTGCAGACCACGTGTAACCACACCAGCCCAGGACCTCCACATCCAGCATCTTCACCTCCAAGATCGTCTGAGACAGCTGACGATCGGACCAGCCACCCGGACAGCTGCTGCAACAATCGGTTTGCATAACCAAAGAACTTATGCACAAACTGTCAGAAACCGTCTCAGGGAAGCTCATCTGCATGCTCGTCATCCTCATCGGGGTCTCGACCTGACTGCATTTCGTCGTCGTAACCGACTTGAGTGGGCAAATGCTCACATTCGATGGCGTCTGGCACTTCGGAGAGGTGTTCTTTTCACGGATGAATCCCGGTTTTCACTGTACAGGGCAGATGGCAGACAGCGTGTATGGCGTCGTGTGGGTGAGCGGTTTGCTGATGTCAATGTTGTGGATCAAGTGGCCCATGGTGGCGGTGGGGTTATGGTATGGGCAAGCGTATGTTATGGACAACGAACACAGGTGCATTTTATTGATGGCATTTTGAATGTGATATCGTGACGAGATCCTGAGGCTCATTGTTGTGTCATTCATCCCTGACCATCACCTCATGTTGCAGCATGATAATGCACAGCCCCATGTTGCAAGGATCTGTACACAATTCCTGGAAGCTGAATGTGGGTGGATGGATTATCTCGGCAAAGGAGAAGTGCTCACTAACACAGATTTAGACAGATTTATGAACAATATTTGAGAGAAATAGGCCTTTTGTATACATAGAAAAAGTCTTAGATCTTTGAGTTCAGCTCTTGAAAAATGGGGGCAAAAACAAAAGTGTTGAGTTTATAATTTTGTTCAGTGTATTTAAGAAGCACCTTCGTTTTAACACTCACTACATTTTTTATATATATATATATATATATATATTATATAGTTTTTTGACATTACACATTTTAGCACAGAAGCCTACTTTCTTGACTGTTGTCATAAGCTGTCATTATATTACTGTGTGAATTTTCAATTTGTGGAAGTCCAATTTGTGGAAGGGTGCAGAATGTGACATTTTTAAATAATTATTTGTTATATATTTTGGTTACATTTGAGAATTAATAAAAATCTAACTGGTTGTGTAAAATAGGCACATAATATCATAATATCAAAATATTGATCAATATACCCCTGAATCGAATCGTATCGAAATCGTATTGCAGAACTTTTTGAGGTATCGGAAAATATCGTATTGCTGGCTATGAGAATCAATATTGTATGGAATCGTGATGACCCGTCCGATTTACACCCCTAGTATTTATGTAACAGGTGGGGTTTATACGAGCATGTATTTCTCATAAACTCTGATACAAACAGTACTCAAAACAACAGAAGGTATATCAACACTAGAGGTGGGTAGTAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108072 True 2661 lncRNA 0.42 2 3062554 3070931

Neighbor

gene id symbol gene type direction distance location
CI01000016_03056468_03058753 TAF12 coding upstream 3265 3056468 ~ 3059289 (+)
CI01000016_03050072_03055313 CTPS1A, CTPS1, CTPS1B coding upstream 7184 3048542 ~ 3055370 (+)
CI01000016_02965137_02979305 SCMH1 coding upstream 83045 2965137 ~ 2979509 (+)
CI01000016_02918064_02918435 NA coding upstream 144014 2917764 ~ 2918540 (+)
CI01000016_02876373_02882129 NA coding upstream 180406 2876187 ~ 2882148 (+)
CI01000016_03158359_03165518 NA coding downstream 87428 3158359 ~ 3165822 (+)
CI01000016_03190518_03261836 NA coding downstream 119235 3190166 ~ 3262243 (+)
CI01000016_03267301_03268376 NA coding downstream 194214 3265145 ~ 3268391 (+)
CI01000016_03503738_03504907 NA coding downstream 432741 3503672 ~ 3504907 (+)
CI01000016_03546616_03553250 TUFT1A coding downstream 475685 3546616 ~ 3553749 (+)
G95003 NA non-coding upstream 19336 3043011 ~ 3043218 (+)
G94991 NA non-coding upstream 34338 3027880 ~ 3028216 (+)
G94988 NA non-coding upstream 38124 3024159 ~ 3024430 (+)
G94978 NA non-coding upstream 73746 2988597 ~ 2988808 (+)
G94977 NA non-coding upstream 75004 2987338 ~ 2987550 (+)
G95007 NA non-coding downstream 21607 3092538 ~ 3092777 (+)
G95033 NA non-coding downstream 198051 3268982 ~ 3295166 (+)
G95339 NA non-coding downstream 282480 3353411 ~ 3353772 (+)
G95341 NA non-coding downstream 286687 3357618 ~ 3357821 (+)
G95349 NA non-coding downstream 299903 3370834 ~ 3371077 (+)
G93406 NA other upstream 2135022 905400 ~ 927532 (+)
G95439 NA other downstream 791244 3862175 ~ 3862305 (+)
G95648 NA other downstream 1201705 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 1763627 4829592 ~ 4837457 (+)
G95792 NA other downstream 2148949 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2334938 5405791 ~ 5407963 (+)

Expression


Co-expression Network