Gene
RNA
| Item | Value |
|---|---|
| gene id | G104144 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 3295267 ~ 3296407 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU118447 | True | 1114 | lncRNA | 0.33 | 2 | 3295267 | 3296407 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_03108551_03121242 | CPA6 | coding | downstream | 174025 | 3107090 ~ 3121242 (-) |
| CI01000018_03035039_03102978 | ARFGEF1 | coding | downstream | 191663 | 3034649 ~ 3103604 (-) |
| CI01000018_02950311_03005969 | KIAA1468 | coding | downstream | 289063 | 2949847 ~ 3006204 (-) |
| CI01000018_02931983_02940190 | NA | coding | downstream | 354847 | 2931926 ~ 2940420 (-) |
| CI01000018_02922931_02928062 | NA | coding | downstream | 367205 | 2922332 ~ 2928062 (-) |
| CI01000018_03570664_03575338 | CSRNP1B, CSRNP1 | coding | upstream | 273770 | 3570177 ~ 3575338 (-) |
| CI01000018_03661621_03698552 | NA | coding | upstream | 364655 | 3661062 ~ 3698780 (-) |
| CI01000018_03727931_03736733 | SLC22A13 | coding | upstream | 431377 | 3727784 ~ 3737067 (-) |
| CI01000018_03745369_03779384 | OXSR1, OXSR1A, OXSR1B | coding | upstream | 448962 | 3745369 ~ 3779384 (-) |
| CI01000018_03795661_03800529 | MYD88 | coding | upstream | 499119 | 3795526 ~ 3800529 (-) |
| G104121 | NA | non-coding | downstream | 30558 | 3219136 ~ 3264709 (-) |
| G104115 | NA | non-coding | downstream | 87447 | 3206380 ~ 3207820 (-) |
| G104099 | NA | non-coding | downstream | 92660 | 3175324 ~ 3202607 (-) |
| G104084 | NA | non-coding | downstream | 189691 | 3105298 ~ 3105576 (-) |
| G104073 | NA | non-coding | downstream | 349522 | 2945546 ~ 2945745 (-) |
| G105071 | NA | non-coding | upstream | 376224 | 3672631 ~ 3672841 (-) |
| G105072 | NA | non-coding | upstream | 376439 | 3672846 ~ 3673062 (-) |
| G105077 | NA | non-coding | upstream | 382897 | 3679304 ~ 3679981 (-) |
| G105079 | NA | non-coding | upstream | 384785 | 3681192 ~ 3681511 (-) |
| G105084 | NA | non-coding | upstream | 394676 | 3691083 ~ 3691358 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | other | downstream | 894364 | 2389201 ~ 2488018 (-) |
| G103842 | NA | other | downstream | 1335209 | 1959497 ~ 1960058 (-) |
| G104968 | NA | other | upstream | 185697 | 3482104 ~ 3500514 (-) |
| G105104 | NA | other | upstream | 711290 | 4007697 ~ 4017817 (-) |
| G105200 | NA | other | upstream | 947060 | 4243467 ~ 4246010 (-) |
| CI01000018_04856240_04875704 | DAP | other | upstream | 1558674 | 4855081 ~ 4876532 (-) |
| CI01000018_06021105_06025859 | NA | other | upstream | 2594929 | 6020861 ~ 6025876 (-) |
