Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU118447 |
| length | 1114 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G104144 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 3295267 ~ 3296407 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU118421 | lncRNA | downstream | 30558 | 3219136 ~ 3264709 (-) | True | G104121 |
| TU118412 | lncRNA | downstream | 87447 | 3206380 ~ 3207820 (-) | True | G104115 |
| TU118390 | lncRNA | downstream | 92660 | 3175324 ~ 3202607 (-) | True | G104099 |
| TU118371 | lncRNA | downstream | 189691 | 3105298 ~ 3105576 (-) | True | G104084 |
| TU118360 | lncRNA | downstream | 349522 | 2945546 ~ 2945745 (-) | True | G104073 |
| TU119427 | lncRNA | upstream | 376224 | 3672631 ~ 3672841 (-) | True | G105071 |
| TU119428 | lncRNA | upstream | 376439 | 3672846 ~ 3673062 (-) | True | G105072 |
| TU119433 | lncRNA | upstream | 382897 | 3679304 ~ 3679981 (-) | True | G105077 |
| TU119435 | lncRNA | upstream | 384785 | 3681192 ~ 3681511 (-) | True | G105079 |
| TU119440 | lncRNA | upstream | 394676 | 3691083 ~ 3691358 (-) | True | G105084 |
| CI01000018_03108551_03121242.mRNA | mRNA | downstream | 174025 | 3107090 ~ 3121242 (-) | True | CI01000018_03108551_03121242 |
| CI01000018_03035039_03102978.mRNA | mRNA | downstream | 191663 | 3034649 ~ 3103604 (-) | True | CI01000018_03035039_03102978 |
| CI01000018_02950311_03005969.mRNA | mRNA | downstream | 289063 | 2949847 ~ 3006204 (-) | True | CI01000018_02950311_03005969 |
| CI01000018_02931983_02940190.mRNA | mRNA | downstream | 354847 | 2931926 ~ 2940420 (-) | True | CI01000018_02931983_02940190 |
| CI01000018_02922931_02928062.mRNA | mRNA | downstream | 367205 | 2922332 ~ 2928062 (-) | True | CI01000018_02922931_02928062 |
| CI01000018_03570664_03575338.mRNA | mRNA | upstream | 273770 | 3570177 ~ 3575338 (-) | True | CI01000018_03570664_03575338 |
| CI01000018_03661621_03698552.mRNA | mRNA | upstream | 364655 | 3661062 ~ 3698780 (-) | True | CI01000018_03661621_03698552 |
| CI01000018_03727931_03736733.mRNA | mRNA | upstream | 431377 | 3727784 ~ 3737067 (-) | True | CI01000018_03727931_03736733 |
| CI01000018_03745369_03779384.mRNA | mRNA | upstream | 448962 | 3745369 ~ 3779384 (-) | True | CI01000018_03745369_03779384 |
| CI01000018_03795661_03800529.mRNA | mRNA | upstream | 499119 | 3795526 ~ 3800529 (-) | True | CI01000018_03795661_03800529 |
| TU118149 | other | downstream | 894364 | 2386208 ~ 2400903 (-) | True | G103873 |
| TU118112 | other | downstream | 1335209 | 1959497 ~ 1960058 (-) | True | G103842 |
| TU119324 | other | upstream | 185697 | 3482104 ~ 3500514 (-) | True | G104968 |
| TU119461 | other | upstream | 711290 | 4007697 ~ 4017817 (-) | False | G105104 |
| TU119464 | other | upstream | 711290 | 4007697 ~ 4010575 (-) | True | G105104 |
| TU119577 | other | upstream | 947060 | 4243467 ~ 4246010 (-) | True | G105200 |
| TU119553 | other | upstream | 1558674 | 4855081 ~ 4875839 (-) | True | CI01000018_04856240_04875704 |
