Gene
RNA
| Item | Value |
|---|---|
| gene id | G105104 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 4007697 ~ 4017817 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU119461 | False | 2607 | TUCP | 0.48 | 17 | 4007697 | 4017817 |
| TU119464 | True | 494 | TUCP | 0.52 | 3 | 4007697 | 4010575 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_03991163_03994220 | NA | coding | downstream | 13459 | 3990550 ~ 3994238 (-) |
| CI01000018_03965992_03984331 | NA | coding | downstream | 22178 | 3965939 ~ 3985519 (-) |
| CI01000018_03942344_03955439 | VILL | coding | downstream | 52258 | 3942087 ~ 3955439 (-) |
| CI01000018_03888251_03907553 | DLEC1 | coding | downstream | 98522 | 3887539 ~ 3909175 (-) |
| CI01000018_03814990_03841716 | MAP3K20 | coding | downstream | 165981 | 3814791 ~ 3841716 (-) |
| CI01000018_04041639_04049792 | NA | coding | upstream | 23013 | 4040830 ~ 4049792 (-) |
| CI01000018_04075425_04081550 | NKTR | coding | upstream | 57588 | 4075405 ~ 4081550 (-) |
| CI01000018_04118240_04160401 | VIPR1B, VIPR1 | coding | upstream | 100170 | 4117987 ~ 4160401 (-) |
| CI01000018_04221457_04229417 | NA | coding | upstream | 203419 | 4221236 ~ 4229417 (-) |
| CI01000018_04231186_04233076 | NA | coding | upstream | 213102 | 4230919 ~ 4233076 (-) |
| G104963 | NA | non-coding | downstream | 195151 | 3811411 ~ 3812546 (-) |
| G105090 | NA | non-coding | downstream | 303798 | 3703444 ~ 3703899 (-) |
| G105084 | NA | non-coding | downstream | 316339 | 3691083 ~ 3691358 (-) |
| G105079 | NA | non-coding | downstream | 326186 | 3681192 ~ 3681511 (-) |
| G105077 | NA | non-coding | downstream | 327716 | 3679304 ~ 3679981 (-) |
| G105115 | NA | non-coding | upstream | 66726 | 4084543 ~ 4085146 (-) |
| G105140 | NA | non-coding | upstream | 68709 | 4086526 ~ 4086789 (-) |
| G105142 | NA | non-coding | upstream | 69327 | 4087144 ~ 4087354 (-) |
| G105141 | NA | non-coding | upstream | 71573 | 4089390 ~ 4092340 (-) |
| G105146 | NA | non-coding | upstream | 78515 | 4096332 ~ 4096565 (-) |
| G104968 | NA | other | downstream | 507183 | 3482104 ~ 3500514 (-) |
| CI01000018_02389202_02488018 | CNTNAP2, CNTNAP2A | other | downstream | 1606794 | 2389201 ~ 2488018 (-) |
| G103842 | NA | other | downstream | 2047639 | 1959497 ~ 1960058 (-) |
| G105200 | NA | other | upstream | 225650 | 4243467 ~ 4246010 (-) |
| CI01000018_04856240_04875704 | DAP | other | upstream | 837264 | 4855081 ~ 4876532 (-) |
| CI01000018_06021105_06025859 | NA | other | upstream | 1873519 | 6020861 ~ 6025876 (-) |
| G106538 | NA | other | upstream | 2512630 | 6530447 ~ 6533512 (-) |
| CI01000018_06639339_06649926 | NA | other | upstream | 2622795 | 6639207 ~ 6649971 (-) |
