G109519


Basic Information

Item Value
gene id G109519
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 2480755 ~ 2482731 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU124447
ATCCCTCCATTCCCCCAAACGCTGAGCTCCTGTTGTGTATATGTGTGTGTATGAAGAAAGAGACAGTGCTTCCCACCGCATGTTAATAAATTGGTCCCCTGTGGACAACAGGGAGGAGGTGTGTGGTCATGATTCTGAAAGCTTCCGGTGAAACGGGCGCTGTTTGATAACAGCTGCCGTCAGCGCTGTCGAATAACAGGACGGCAGCTATGCACTTATTAATGGTGAATTATTCCTTTATTCCGGCCCAAATGAGAGGGATGCAAAGGGATAGCATATGCCGGCTCTGGTGATCAGAGCAAAGGTGGGCTGGAGGTTACTTTCCATTTCAAAGAGCCACACAGCGAGAGGTCTGTCCACGGTTTCTGCCGTATATACCTTCGCATTGAGCCTGACTGGGATGAATTATGCAAGGCCTTAACCCAGATGTGTTTGCACACACAAACATTTTCATCTTCTTTCTCCCCCTCCAATACATAAACGGTGGTGAGAAATTGGGGTTAAGAAAACACAGAATATATATTTGAACGCTCCTGTTCCACTCTTAACTGATATTTTTGGGGCAGAGTAACAGGGGAGAGCCACAAAAATGTGATCAGAGCATGTTGCAGGNNNNNNNNNNNNCCACATCACCCACCAGAGCACCAAGGCTGATCATGATCATACTGCATACAGCACCAACAGAAGTGGTAACATAGTATTGTGCACACACAAACTTACACACAGTACATAAAAACCCCAAAACAGGTTTAAGGCGCTCTAACAATGTTTTTTTTTTTTTTTTTAGAATGTTGCTAGGTTAACAGTGTTAAAATAATCATTAAAAAATATAACATACAATTTAATTAGTTTAATTTAATTAGATTAATGGGCATTTTTCTCTATTGAATGAAATATTTACATATATTTGGCATTGAGTTTGTCATAGAATATTCTAGAAGACATGCAATGCTGCCTTTAGATGATGTATCTTATAAAGCAATGTAATGTTGCTGCTTACATTTTGGAACAGCTTTCATGTGGAAAATTTGCCTATGATGCCTTAAAATGCTGTCTAGTTAGGTAGTTCACTACACTATGAAAAATTAAGTTGAGAAAACTTAAAAGTTTAAAGCTGCAGTCCGTAGATTTTGCCTCTGTCGCCATCTCTGTTTGAAACCTGCAATTGCAGTTATTTGCGGAATTACCATCTTTACGTGGGTTGTGCATCGGCACGGCTCCTCAGCGCGGATGAATCTAATGTTTGCATGCTCAAATTTCCTGCAGAAACCCACCAGTACCGATTTTATTATAAAAAAATTATTACAAGCTTACCGTTGTGAATCGGGCTAAGGTAAGGAGAGAGTTTTGAACACTGGCTGGTTATGTACTTGCTTAAAAATTGATTTTTTACAGTGTTTTGTAACTGAACTTCTA
>TU124448
ATCCCTCCATTCCCCCAAACGCTGAGCTCCTGTTGTGTATATGTGTGTGTATGAAGAAAGAGACAGTGCTTCCCACCGCATGTTAATAAATTGGTCCCCTGTGGACAACAGGGAGGAGGTGTGTGGTCATGATTCTGAAAGCTTCCGGTGAAACGGGCGCTGTTTGATAACAGCTGCCGTCAGCGCTGTCGAATAACAGGACGGCAGCTATGCACTTATTAATGGTGAATTATTCCTTTATTCCGGCCCAAATGAGAGGGATGCAAAGGGATAGCATATGCCGGCTCTGGTGATCAGAGCAAAGGTGGGCTGGAGGTTACTTTCCATTTCAAAGAGCCACACAGCGAGAGGTCTGTCCACGGTTTCTGCCGTATATACCTTCGCATTGAGCCTGACTGGGATGAATTATGCAAGGCCTTAACCCAGATGTGTTTGCACACACAAACATTTTCATCTTCTTTCTCCCCCTCCAATACATAAACGGTGGTGAGAAATTGGGGTTAAGAAAACACAGAATATATATTTGAACGCTCCTGTTCCACTCTTAACTGATATTTTTGGGGCAGAGTAACAGGGGAGAGCCACAAAAATGTGATCAGAGCATGTTGCAGGNNNNNNNNNNNNCCACATCACCCACCAGAGCACCAAGGCTGATCATGATCATACTGCATACAGCACCAACAGAAGTGGTAACATAGTATTGTGCACACACAAACTTACACACAGTACATAAAAACCCCAAAACAGGTTTAAGGCGCTCTAACAATGTTTTTTTTTTTTTTTTTAGAATGTTGCTAGGTTAACAGTGTTAAAATAATCATTAAAAAATATAACATACAATTTAATTAGTTTAATTTAATTAGATTAATGGGCATTTTTCTCTATTGAATGAAATATTTACATATATTTGGCATTGAGTTTGTCATAGAATATTCTAGAAGACATGCAATGCTGCCTTTAGATGATGTATCTTATAAAGCAATGTAATGTTGCTGCTTACATTTTGGAACAGCTTTCATGTGGAAAATTTGCCTATGATGCCTTAAAATGCTGTCTAGTTAGGTAGTTCACTACACTATGAAAAATTAAGTTGAGAAAACTTAAAAGTTTAAAGCTGCAGTCCGTAGATTTTGCCTCTGTCGCCATCTCTGTTTGAAACCTGCAATTGCAGTTATTTGCGGAATTACCATCTTTACGTGGGTTGTGCATCGGCACGGCTCCTCAGCGCGGATGAATCTAATGTTTGCATGCTCAAATTTCCTGCAGAAACCCACCAGTACCGATTTTATTATAAAAAAATTATTACAAGCTTACCGTTGTGAATCGGGCTAAGGTAAGGAGAGAGTTTTGAACACTGGCTGGTTATGTACTTGCTTAAAAATTGATTTTGGATTATTTTTAACCAAAAAAAGTTACTGAAAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124447 False 1416 lncRNA 0.40 3 2480755 2482731
TU124448 True 1426 lncRNA 0.40 2 2480988 2482731

Neighbor

gene id symbol gene type direction distance location
CI01000019_01734247_01739663 KIN coding downstream 741092 1734247 ~ 1739663 (-)
CI01000019_01701100_01714662 ITIH5 coding downstream 765587 1699408 ~ 1715168 (-)
CI01000019_01676776_01677954 NA coding downstream 802183 1676663 ~ 1678572 (-)
CI01000019_01660708_01661966 NA coding downstream 818785 1659717 ~ 1661970 (-)
CI01000019_01580774_01598483 PRKCQ coding downstream 881748 1580648 ~ 1599007 (-)
CI01000019_02485969_02486810 NA coding upstream 2583 2485314 ~ 2486846 (-)
CI01000019_02502701_02503852 NA coding upstream 19492 2502223 ~ 2503874 (-)
CI01000019_02601366_02629849 NA coding upstream 118328 2601059 ~ 2631149 (-)
CI01000019_02893150_02903846 NA coding upstream 410342 2891564 ~ 2903926 (-)
CI01000019_02907262_02983656 NA coding upstream 424439 2907170 ~ 2985939 (-)
G109480 NA non-coding downstream 3771 2474121 ~ 2476984 (-)
G109486 NA non-coding downstream 26201 2450753 ~ 2454554 (-)
G109479 NA non-coding downstream 62266 2418280 ~ 2418489 (-)
G109478 NA non-coding downstream 63005 2417472 ~ 2417750 (-)
G109473 NA non-coding downstream 72534 2407995 ~ 2408221 (-)
G109521 NA non-coding upstream 5560 2488291 ~ 2491656 (-)
G109555 NA non-coding upstream 177705 2660436 ~ 2660703 (-)
G109554 NA non-coding upstream 178179 2660910 ~ 2661404 (-)
G109558 NA non-coding upstream 223632 2706363 ~ 2749128 (-)
G109437 NA other downstream 139997 2340203 ~ 2340758 (-)
CI01000019_01503557_01515831 NA other downstream 962918 1503466 ~ 1517469 (-)
G107820 NA other downstream 1001614 1478851 ~ 1479141 (-)
G107779 NA other downstream 1056938 1423565 ~ 1423817 (-)
CI01000019_03618642_03619707 NDUFB2 other upstream 1135657 3618388 ~ 3619973 (-)
G110029 NA other upstream 1378270 3861001 ~ 4015766 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 3088209 5570940 ~ 5572535 (-)

Expression


Co-expression Network