G109558


Basic Information

Item Value
gene id G109558
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 2706363 ~ 2749128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU124490
GGCAGAGCAAGTGTGATGAGAATCTTGATGATCAAGTTAGATAAGGCGACTTCCTTATGTATTCGACTTGAATGTGGGAAATGTCATAATAATGAATGCCTGACTCTGAGCTTCCCAGGTGCACATGAAGATCAGTTGACCTGTGCTGAAGACCTCTCCAGACCCTGTAAAACTGTCTCTCAGCCGTTTGTCCTGCGTTGCTGGAATGGCACACTATGGGCAGCTCGCACAGACTCACAACAATGATGTGGAGTGGCGCAGTACTGGGGTGGTGGTGTTACTGTTAAGCTGTTGTCACTCTGCTGAAGGAGGAAGTTGTGTGTCAGGGCAGAGAATGAGTCTGGACCATATGGCACTTTAATGGTCTGCGTGAGGGTCTTGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU124490 True 384 lncRNA 0.48 4 2706363 2749128

Neighbor

gene id symbol gene type direction distance location
CI01000019_02601366_02629849 NA coding downstream 75214 2601059 ~ 2631149 (-)
CI01000019_02502701_02503852 NA coding downstream 202489 2502223 ~ 2503874 (-)
CI01000019_02485969_02486810 NA coding downstream 219517 2485314 ~ 2486846 (-)
CI01000019_01734247_01739663 KIN coding downstream 966700 1734247 ~ 1739663 (-)
CI01000019_01701100_01714662 ITIH5 coding downstream 991195 1699408 ~ 1715168 (-)
CI01000019_02893150_02903846 NA coding upstream 143945 2891564 ~ 2903926 (-)
CI01000019_02907262_02983656 NA coding upstream 158042 2907170 ~ 2985939 (-)
CI01000019_03000691_03020851 TRHDE coding upstream 250507 2999635 ~ 3020851 (-)
CI01000019_03055727_03057818 NA coding upstream 306326 3055454 ~ 3058001 (-)
CI01000019_03122047_03127637 MDM2 coding upstream 372414 3121542 ~ 3127637 (-)
G109554 NA non-coding downstream 44959 2660910 ~ 2661404 (-)
G109555 NA non-coding downstream 45660 2660436 ~ 2660703 (-)
G109521 NA non-coding downstream 214707 2488291 ~ 2491656 (-)
G109519 NA non-coding downstream 223632 2480755 ~ 2482731 (-)
G109625 NA non-coding upstream 11720 2760848 ~ 2761529 (-)
G109651 NA non-coding upstream 58113 2807241 ~ 2808871 (-)
G109693 NA non-coding upstream 209446 2958574 ~ 2958833 (-)
G109704 NA non-coding upstream 283699 3032827 ~ 3033199 (-)
G109437 NA other downstream 365605 2340203 ~ 2340758 (-)
CI01000019_01503557_01515831 NA other downstream 1188526 1503466 ~ 1517469 (-)
G107820 NA other downstream 1227222 1478851 ~ 1479141 (-)
G107779 NA other downstream 1282546 1423565 ~ 1423817 (-)
CI01000019_03618642_03619707 NDUFB2 other upstream 869260 3618388 ~ 3619973 (-)
G110029 NA other upstream 1111873 3861001 ~ 4015766 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 2821812 5570940 ~ 5572535 (-)

Expression


Co-expression Network