CI01000026_01090877_01106876 (GBA2)


Basic Information

Item Value
gene id CI01000026_01090877_01106876
gene name GBA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1090755 ~ 1107995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_01090877_01106876.mRNA
CTTTAAATAAAGGGAATAACCTGTATGGATTAACACTTCTATCTATTTTGCATTTTTTAAAGCATTTAGGGAGCTGATTTTTGCACTTCTGGTTTGGACTGGTGATCTGAGAGCTTTGGACTATGGATTTAAATGACAGCACATCTCTAACTGAGCTGATGAGCCGGTACGTTTCTACAGAAACAGGATTTGGTGTCCCCAAGGATGGCTGGCGGATATGTCTGGCACATGAGTTCAAAGAGAAGCGGAAACCATTTCAAGCCAAAGACGTTTCGATATCCACCGTTATTAATCATCTTTCTTTAGGTGTCAGGTATCTGAGATGGTGGTACAGAAAGACCCAGGTTGAGAAGAAGACTCCTTTTATTGATATGTTTAGGGCTTTACCACTGAAACAAATTTATGGTGCTCCTCTTGGTGGCATTGGGGGAGGCAGTATCACACGTGGATGGAAGGGGGATTTCTGCCGGTGGCAACTAAATCCCGGAATGTACCACTACAAAACCGTTATTGCTAACCAGTTTACAGTATGTCTGCGCAGGGGGGGTCAGACAGTATACCAGCAAGTGTTGTCTACAGAGCGACCCTCGACTCTTCATGGTTGGAACTGGGGTTATTGTGGTGAATACGCCTTTTACCATGCCCTGTACCCACGAGCCTGGACCGTCTACCACCTGCCTGGCCAGAACGTCACTCTCACTTGCAGGCAGGTGTCACCTGTCATCCCTCATGACTACAAGGACTCCAGTCTTCCTGTGGCTGTGTTTGTGTGGGACATTGAGAATAAGAATGACTACGCTCTTGATGTTTCCATCATGTTCACGATGGTTAATGGGTCAGGCCTTGAAGACGATAAGAGTGGGGGCCACTGGAATGAACCATTTCACCTTGAAAAAGAGGGAGAATCTGTGTCTGGGGTTTTACTACATCACCAGACGCCTGTCAACCCTTACACTCTGTGTATAGCTGCAAGAGAAAAGTCTGACCGAGAGATCAGTCACCAGACAGCGTTTAGCCCAAAGGGAACCTGTAGTGCTCTGTGGAGTGACCTCATGACCGATGGACGGCTCGACTCGCCTAAGGACTCCAGCACACCCACACAGAAAGGGGAGGAAGTGGCGGCAGCCCTGGCTGTTAGCTGCTCGGTGCCTGCTAACAATCGCAACAGTGTGGAGTTCAGTTTGGCCTGGGATATGCCTAAAATCACATTTGGCTCCAGAGAGAGAATATATGTCAGGAGATACACGCGTTATTATGGCACTAAAGGAGACGCTGCCTCATCTCTGTCTCACTACGCGCTCACACACTACTGTAAATGGGAGGAGAGCATTGATGAGTGGCAGAGGCCGATTCTACAGGATGGGTCTGTTCCGTCTTGGTATAAATCTGCTCTGTTTAATGAGCTCTACTTTGTTGTGGATGGTGGAACTGTGTGGGTCGAGCTTCCAGAGGACGCTGATATCAGCGGTGGGCTTCGTCCTGAGGACGGGGGGCTTTCAGCCCAACCTGAAGTTGTCAAGGAGTACGGCCGATTCGCTTACCTAGAGGGTCAGGAGTACAGGATGTATAACACGTATGATGTGCACTTCTATGCTTCATTCGCTCTCATCATGCTTTGGCCCAAGCTGGCTCTGAGTCTGCAGTATGATATTGCTGGTAGTGTCGTTCAGCATGACCCTACAGAGAGGTTAAATCTAATGGACGGCCGATACTCCCCAGTCAAGACCCGGGGCGTTGTACCTCACGACATTGGAGAACCTGATGATGAGCCATGGGTTCGTGTCAATGCTTACTTAATCTACGATACAGCCGACTGGAAGGATCTGAACTTGAAGTTTGTGCTTCAGGTGTTCCGAGACTATCACCTGACCCAGGATGAGCAGTATCTGAAGGACATGTGGCCTATATGCCAGACAGTCATGGAAACAGAGTTGAAGTTTGATAAGGATGGTGATGGGCTGATAGAAAATTCTGGCTATGCAGACCAGACATATGATGGATGGAAGGTGACAGGACCCAGTGCATACTGTGGCGGTTTGTGGCTGGCGTCAGTGTGCATGATGTGTAAAATGGCACGTGTGCTGAATTGCGAGTCTGTTTATCAGCGCTACAGAGATATTTTGGAGAGAGGAAGTGCAGCCTTTGACAAACTCCTGTGGAATGGCAAATACTACAATTATGACAGCAGTGGACAGAATCTGTCCAACAGTGTAATGTCAGACCAGTGTGCAGGCCAATGGTTCCTCAGGGCATCTGGACTTGGGGACGATGACTACCAGGTTTTTCCCAAGGAGAAAATCTGTAGTGCATTGAAGTCTGTGTTTGACCTCAATGTCATGAGCTTTGCAGACGGACAGATGGGTGCAGTGAATGGGATGAGGCCAGAGGGTGTGCCTGATCGTTCCAGTGTCCAATCGGATGAGGTGTGGGTGGGAGTAGTGTACGGATTGGCAGCTACAATGATACATGAGGGCCTGGTGGAAGAGGGACTGCGCACTGCAGAAGGCTGTTATCGTGCTGTATGGGAGCGAATGGGAATGGCCTTCCAGACTCCCGAAGCGTATTGTGAGAAAGGCATCTACCGCTCTCTCGCTTATATGAGACCTCTGAGCATCTGGGCAATGCAGCTTGCACTGAACAATCGACCAAACCACAACAAAACCACTGATGAAGATGTGGGACAGGACTGAGCTGGAGCCTTAAAAATCTGTTGAAGGGAACTTGCACTGTCGAGCCTCCATAATATACAGTAGTGTCCTCTTAATCCTTGCATTTTGAACTTTAAAAGACTGTAAAAGAGTTTTGGATGTAACGTAATCGTGTCGTTGATTCACACAGAACATAATTTCCATTTTTTTGTAAAACTGACTTTTCCACAGAAAATGTGTATAAGCTTTACCACAGTCCTTCCATTAGCAGCTGCAAATTATAGTTTTACAAATGGAAGTGTAAAGGCCTAGTCTCAGTGAACTGACATGCTGTTCATTATGATATAGTGTGTAGGGTCATTGAATCAAGTAGTTAGAGTATGATTCTATATTATTTTCACTTTGTTTTAATTTCTGTTATAGGAATGCTTGAAGAAAGGACTGCTGTTTTTTTTTAAATAGCTGTCATTGTACGTGTCATAAATCATCTATCCGAGTCAGTACTGTACATTATTCTACATAATTGTAAGAGATATATAATTGAGTAAATTGGAATGAATGTTTACTGCCATCAGATTCATTTTTTCCTCACATGCATCATTAGGCATTTATTTTCTCTGCAGTATTTCAAAGTTCTGGTGATAAGGAAATTGACCTGGCCAATGTTAAAAATCAAACTCAAAACCCTGAGAATCACAAGAGGCAAGCCTGGCTTTAGTGTGTGATTTAAATCACTAAATGGAAGTGAATTTGACCTTTGTGACCTTTTAGGGAAGCCACAGCAATGCACATTACTATTCAAAAGTTTGGGGTCGGTAAGATTCTTTTAATGATTTTCAAGGCTGCATTTATTTGATCAAAAATATTTAAAACGGCAATATTGTGAAATATTATTACAATGTAAAATAACTTTTCTGTTCTGTGTTTTAAAATAAAAAACAATTCAGACTCCTAGCTTGTTGTGAAAGCTTGTAATATTGGTCAAAGGAATCGAGCTGTAGGTCTGGTCATACAGTATGCCTTTTTAAATTATGATTCCTTGAGTTATCACAAATGTAATGTCTAGATTGGGAACCCAGGCCATAATTCTTAGAGTACAATCCATTTAATGATTCCTGTAGCGTGTATCTAACAACAATATATGTAGTAAACAGCATAGAA

Function

symbol description
gba2 Enables beta-glucosidase activity. Acts upstream of or within axonogenesis and central nervous system development. Located in plasma membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 46. Orthologous to human GBA2 (glucosylceramidase beta 2).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17108 GBA2; non-lysosomal glucosylceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_01090877_01106876.mRNA True 3809 mRNA 0.44 16 1090755 1107995

Neighbor

gene id symbol gene type direction distance location
CI01000026_01081297_01082783 NA coding upstream 7963 1081297 ~ 1082792 (+)
CI01000026_01047263_01053858 NA coding upstream 36892 1046857 ~ 1053863 (+)
CI01000026_01028747_01045377 NA coding upstream 45378 1028747 ~ 1045377 (+)
CI01000026_01024484_01025519 NA coding upstream 64973 1024484 ~ 1025782 (+)
CI01000026_01003422_01010038 NELFA, NELFA.L coding upstream 80156 1003422 ~ 1010599 (+)
CI01000026_01143460_01144643 NA coding downstream 35215 1143210 ~ 1144767 (+)
CI01000026_01162696_01203694 NA coding downstream 54428 1162423 ~ 1203924 (+)
CI01000026_01216388_01217050 METTL12 coding downstream 108393 1216388 ~ 1217365 (+)
CI01000026_01272100_01280856 NA coding downstream 164105 1272100 ~ 1281389 (+)
CI01000026_01300881_01338917 MARK2B, MARK2 coding downstream 192886 1300881 ~ 1339688 (+)
G126621 NA non-coding upstream 147180 942754 ~ 943575 (+)
G126656 NA non-coding upstream 152298 938211 ~ 938457 (+)
G126655 NA non-coding upstream 152614 937915 ~ 938141 (+)
G126620 NA non-coding upstream 155445 934818 ~ 935310 (+)
G126585 NA non-coding upstream 180304 907320 ~ 910451 (+)
G126606 NA non-coding downstream 109575 1217570 ~ 1223355 (+)
G126713 NA non-coding downstream 118204 1226199 ~ 1226411 (+)
G126733 NA non-coding downstream 154195 1262190 ~ 1262404 (+)
G126603 NA non-coding downstream 222987 1330982 ~ 1384523 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 312958 776757 ~ 777830 (+)
G126556 NA other upstream 335592 754791 ~ 755163 (+)
G127500 NA other downstream 823188 1931183 ~ 1946439 (+)
G127531 NA other downstream 1201327 2309322 ~ 2312135 (+)
G127519 NA other downstream 1285688 2393683 ~ 2427006 (+)
CI01000026_02659356_02660297 NA other downstream 1551220 2658605 ~ 2660829 (+)
G127979 NA other downstream 2644556 3752551 ~ 3762986 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033700 gba2 coding NC_007118.7 CM002891.2 24645186 ~ 24673416 (+)