Gene
RNA
| Item | Value |
|---|---|
| gene id | G126606 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 1217570 ~ 1223355 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU143835 | True | 1378 | lncRNA | 0.38 | 7 | 1217570 | 1223355 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_01216388_01217050 | METTL12 | coding | upstream | 205 | 1216388 ~ 1217365 (+) |
| CI01000026_01162696_01203694 | NA | coding | upstream | 13646 | 1162423 ~ 1203924 (+) |
| CI01000026_01143460_01144643 | NA | coding | upstream | 72803 | 1143210 ~ 1144767 (+) |
| CI01000026_01090877_01106876 | GBA2 | coding | upstream | 109575 | 1090755 ~ 1107995 (+) |
| CI01000026_01081297_01082783 | NA | coding | upstream | 134778 | 1081297 ~ 1082792 (+) |
| CI01000026_01272100_01280856 | NA | coding | downstream | 48745 | 1272100 ~ 1281389 (+) |
| CI01000026_01300881_01338917 | MARK2B, MARK2 | coding | downstream | 77526 | 1300881 ~ 1339688 (+) |
| CI01000026_01354575_01360934 | NAA40 | coding | downstream | 131055 | 1354410 ~ 1361847 (+) |
| CI01000026_01364309_01371253 | B3GAT3 | coding | downstream | 140954 | 1364309 ~ 1371368 (+) |
| CI01000026_01378924_01381978 | NA | coding | downstream | 154989 | 1378344 ~ 1382540 (+) |
| G126621 | NA | non-coding | upstream | 273995 | 942754 ~ 943575 (+) |
| G126656 | NA | non-coding | upstream | 279113 | 938211 ~ 938457 (+) |
| G126655 | NA | non-coding | upstream | 279429 | 937915 ~ 938141 (+) |
| G126620 | NA | non-coding | upstream | 282260 | 934818 ~ 935310 (+) |
| G126591 | NA | non-coding | upstream | 305510 | 906041 ~ 912060 (+) |
| G126713 | NA | non-coding | downstream | 2844 | 1226199 ~ 1226411 (+) |
| G126733 | NA | non-coding | downstream | 38835 | 1262190 ~ 1262404 (+) |
| G126603 | NA | non-coding | downstream | 107627 | 1330982 ~ 1384523 (+) |
| CI01000026_00776867_00777588 | NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S | other | upstream | 439773 | 776757 ~ 777830 (+) |
| G126556 | NA | other | upstream | 462407 | 754791 ~ 755163 (+) |
| G127500 | NA | other | downstream | 707828 | 1931183 ~ 1946439 (+) |
| G127531 | NA | other | downstream | 1085967 | 2309322 ~ 2312135 (+) |
| G127519 | NA | other | downstream | 1170328 | 2393683 ~ 2427006 (+) |
| CI01000026_02659356_02660297 | NA | other | downstream | 1435860 | 2658605 ~ 2660829 (+) |
| G127979 | NA | other | downstream | 2529196 | 3752551 ~ 3762986 (+) |
