CI01000026_10640494_10646504 (BAT1, SLC7A9)


Basic Information

Item Value
gene id CI01000026_10640494_10646504
gene name BAT1, SLC7A9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10640494 ~ 10646840 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10640494_10646504.mRNA
ATGGGTGAGGATCTGAAAAAGGTGAACACTCAAAATGGGAGCGTCCCAGAGGCTCTGGAAGCCAAAAAGCATGAGCAGCCAAAAGCAGCAGCTCTGCATCAGAATGTGAGTATGAGAGAAAGAGAATCTTACTCATTATGGGCACATTACACAGAAGAATGTGAAGAATGTTTAATGATCACTGGTTTCTGTCCGGAGTCGATGTGTGTGGGCGTGAGAGTGGGTCTTGTAAGTGGCATCTGTATGATAGTGGGAACAATGATCGGCTCAGGGATCTTCATTTCTCCCAAATCGGTTCTGGCGGGAACTGGAGCTGTGGGTCCATGTCTGTGTGTGTGGGCGGCTTGCGGAGTACTGGCTACAATGGGGGCCCTCTGCTATGCCGAGCTAGGCACAATGATCATGAAGTCTGGTGGTGAGTATCCATACCTGATGGAGGGCTTCGGGCCAGTGCCGGCATACCTATATTCCTGGACCACAGTCATCGTGTTGAAGCCTTCGTCATTTGCCATCATTGCCCTGAGTTGTGCCGAGTACGCCGCCACTCCATTTTACCCAGGATGCACTCCTCCTCAAGTGGTTATCAAATGCCTGGCTGCCGCTTGTATCTTAATAATTACACTCGTCAACTGTCTGAGTGTGAAGCTGGCCTACAGAGTGCAGAACTTCTTCACAGCAGCCAAACTCTTGATTATTGCTGTTATCGTGGTTTCAGGCATCGTTCTGTTGGCTCAAGGCAATACACAGAACCTTAAAGACCCATTTGCAGGGGCAACAACATCATTTGGAGCAATTGGCCTTGCATTTTACAATGGGCTCTGGGCTTATGATGGATGGAATCAGCTTAACTTCATAACAGAAGAGCTGAAAAATCCATACAAAAACCTTCCCCTGGCAATTCTTATCGGGATTCCCCTGGTTACTGTGTGCTATATATTTGTCAACATTGCATATTTCACTGTCATGACCCCTATTGAACTTCTACAGTCTTCTGCCGTTGCTGTGACCTTTGGTGACAGAGTGCTGTACCCATTATCATGGGTTGTGCCTCTATTTGTGGTCTTTTCCACTTTTGGCGCAGCCAATGGGAGCTGTTTCACTGCAGGCAGGTTGACATATGTGGCAGGACGGGAGGGACACATGGTTAGGTTCTTGTCGTACATCAGTGTGAAACGTTACACGCCTTCTCCAGCTCTGATGTTTAATGGCTTCCTGTCAATCATCTACATCATCCCAGCAGACATAAACACTCTAATCAATTACTTCAGTTTTGCTCAGTGGGCTTTCTATGGGCTCACATGCCTTGCGCTCATCGTTATGCGATTCACTAGAAAGGACCTTCAGAGACCTGTCAAGGTGCCGATAGTCATTCCTGCTTTGGTAGTGATTGTGTCCTGCTACCTGGTTCTTGCTCCCATCATAGACAAGCCTGAGTGGGAGTACCTGTACTGCACACTGTTCATAGTTGGCGGTCTTCTCTTATATGTACCCTTCATTTACTACAAATTCAACTGGACTCGCCGCATCATGAGGCCACTCACTATGCACATTCAGCTGCTACTGCAAGTCGTTCCAGCTGAAAAGATTGAGTGACAGATGTCAAACAGGAGGAAAGACAGACGTAATAGCCAGTAATGGACAACAGAATGATCCGTGGAAATGTGGATAAAGGATCCTTAAAGGGAACATGGCTGCAAATATTATTATTATTATTCAGAATGCAAGTCCATCCATTGTTTTTTACAATGTATTAAAAGATGTTTTTACTTTCAAGAATAACACATCACTTTCATGAATGTCTGTATATTCTGACAACTTTCAGTATATCTAACTTATTATTGTGTAATTATATGCTTATAAGTTTGTTGTACAGGATAGCAATGATATTTTTTTCCAAGTTCCTTGAACTTGAATGTATTAATTGTGTTA

Function

symbol description
slc7a9 Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cystinuria. Orthologous to human SLC7A9 (solute carrier family 7 member 9).
bat1 Enables branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid biosynthetic process and branched-chain amino acid catabolic process. Located in mitochondrial matrix. Orthologous to human BCAT1 (branched chain amino acid transaminase 1) and BCAT2 (branched chain amino acid transaminase 2).

GO:

id name namespace
GO:0015297 antiporter activity molecular_function

KEGG:

id description
K13868 SLC7A9_15, BAT1; solute carrier family 7 (L-type amino acid transporter), member 9/15

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10640494_10646504.mRNA True 1929 mRNA 0.45 12 10640494 10646840

Neighbor

gene id symbol gene type direction distance location
CI01000026_10634025_10634327 NA coding upstream 4969 10633454 ~ 10635525 (+)
CI01000026_10547566_10588420 CEP89 coding upstream 51423 10547271 ~ 10589071 (+)
CI01000026_10521984_10543018 RHPN2 coding upstream 97386 10521984 ~ 10543108 (+)
CI01000026_10468478_10482863 LRP3 coding upstream 157539 10468478 ~ 10482955 (+)
CI01000026_10458602_10465979 GPATCH1 coding upstream 173981 10458602 ~ 10466513 (+)
CI01000026_10651216_10652913 NA coding downstream 2703 10649543 ~ 10653754 (+)
CI01000026_10655730_10656230 NA coding downstream 8357 10655197 ~ 10656735 (+)
CI01000026_10670565_10671520 NA coding downstream 22815 10669655 ~ 10671722 (+)
CI01000026_10683580_10685297 PTPMT1 coding downstream 36003 10682843 ~ 10685468 (+)
CI01000026_10688269_10691344 NDUFS3 coding downstream 40088 10686928 ~ 10691424 (+)
G133383 NA non-coding upstream 12418 10552960 ~ 10628076 (+)
G133373 NA non-coding upstream 124846 10515420 ~ 10515648 (+)
G133344 NA non-coding upstream 253250 10387042 ~ 10387244 (+)
G133339 NA non-coding upstream 258736 10381554 ~ 10381758 (+)
G133338 NA non-coding upstream 258945 10381254 ~ 10381549 (+)
G133406 NA non-coding downstream 137952 10784792 ~ 10785562 (+)
G133420 NA non-coding downstream 239213 10886053 ~ 10895159 (+)
G133426 NA non-coding downstream 260635 10907475 ~ 10907675 (+)
G133442 NA non-coding downstream 471871 11118711 ~ 11119022 (+)
G133443 NA non-coding downstream 472808 11119648 ~ 11119877 (+)
G133192 NA other upstream 478533 10159819 ~ 10161961 (+)
G132667 NA other upstream 1071334 9568739 ~ 9569160 (+)
G131077 NA other upstream 2133707 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 2341080 8297857 ~ 8307629 (+)
G130967 NA other upstream 2451421 8188374 ~ 8189073 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 423928 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 598093 11241496 ~ 11246204 (+)
G133542 NA other downstream 829277 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location