CI01000026_10651216_10652913


Basic Information

Item Value
gene id CI01000026_10651216_10652913
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10649543 ~ 10653754 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10651216_10652913.mRNA
GTATATATGGTTACGGATACCTCTCTAACCCCAGCTCGATGTATGTGATCTGACTATAAGGCCTTCACCAGGCTGGTCAGACGAGGGCCACTAAAAGAAAACCCCTGATGTCCCCCGGACTTCTGCTGGGTTGAGGACTTACCGCAACCGTCAGGAGGACTTCCAGGTGGTCAAATTCCTCCCACTCATCTTTAATTTTAGACTGTAATAGTAATGTACCTAATATGAGAGTCAAATTAATCTGGCAAATTGAATCGTCTTCAGCATCAGGATAAATTAATTAATCTCTGTTGCATTCCCACTTTTGCACTGAGGCGCTCGTCGATCCTTCCTCCGTTCTGACATGCTCTTTATCAGTTGGAGCAAACAGCGGCTTTTAAGCCACCAGTTGAGTCTGCTCAATCTCCTCGTTGGTCCCCCTAAGGGATTCTTCAGCCTCTGCCAGCATTAGAGGCACCTGGTGTGAACTCAGTGTGTTTCACTTTCCAATAACATCCTCTGTATTAACAGAACCGCTTTTACCTTAAAATGCTTTTGTTAGAGACATTTACTCATCACCCATTCCAGTCCTTCTTGGAGTGACCTGTGACAATTCATGTGGGTTGAGGGCTGTCCATACTCCTACAACACATTGAACAGGGCTTGCGTTCATGTCATTATTTACTCAATATTATACATGATTTGTTTTTGTTATATGTTTTTTTTTTTTTTTGCTGTTTTTAAATGAGTACCACTACCATCAAATCTTTTCTTAGACTTTCACCATTCCTTATTCAACTTATTCAGGTTTTTCTAACTGGAAAACACTCATCCCACTTTTAACGTTAACAATCACAAGACAATATTTTATACATTTGGAACAGAATCAGTTCCGTTCGATGGAATCATTATGACATGCTGCAAAAGGAAAAAAAAAGTTAAGTGTGGGGTGGACAGGGCAAGCATGCTTGATCTCTGCCTTCCCAAGTTATCGCAGGTGTGTGGCACTGTTGCTTTCTGCCACAACAATGACCCAGGCCAGGATAGTTAGCCAGATTCATCCATGGTCATTATTTTATTAGGCTTTATCTACATTGTGGGCCCGTTTAGAATATTTGAATACAGCTGTTCATGGCATTTTGTCTGCCTTGGTGCACCATCATTCATACACACTTTCACATCTCTCTGGCCAGAGTATCATCTCTTTTTTTTTTTTTGTCACTACCTCTGCAGACAGTTAACTGAATGGGGAACGTATATTGTTAAGTTTTTTTTTTTTTTTTTCCCCAATATACTAATTATCTTTTAGGCCACACACTACTATTTATTTGACACTGGAATAATTTTAAACTGCCAGACTTGTCAAGTGGTAGGCCTACCTGTTGTTTTTCAGCGCTTATCAGGATTGACCATCAGTTCATTAGACATGGATTTTATAAGTGTTGTTGGACTTTGTTGCAATCATAAATCAATATATTCAATCGATTATAATTGTAGTATAATAAAGTCCTGATGTGAATGTGGCAAAGTTATGAAAAGCAAGCGTTCTTCCCTTGCTGTAGATGGCGCTCAATCACCAAATACGTAATAAATATTTTATTATTTTCTCTGTGCTGTCCTTCACGCCATAGTTGACCGAAGCCTAAAGTTTTCGAAAGATATTAGTGTAACTGAACATTTAAGCGGAGGCCAAGATGAACACGGCGCTGAAACACTGGAGAGAGGCGGCGACGGTGATCTTGGCGGCCGGGCTGAGACAAACACAGAGCGCGGACTTTCTTAAAGCAGGTCTGGAAAAAGTAACTGATGTAGCGCACAAATCTGCCTTCGATTATCAAGTGCTACTGCTGAAACGCAGCGGTCACAGCGGGTTCATGCCCAATGCCTACGTGTTTCCCGGGGGTCTGGTGGATTCGTCTGACTTCTCCAGCGAGTGGCAGGAGATCTTTAAAGCCTTCACGGAAGCGCCCAACTATGGCATTGGAGTTGTGAAGCAGCCGCTGGCGACCAGGCCACCCATTTTCGCCACTGACCGAGCGCAGCTGGGATCTCCGATCCCGGGAGATGTAGCTTTCAGGATATGTGCGGTGAGAGAGACGTTTGAGGAGTCAGGTTTGCTCCTCGTGGTTCCCAAACACGAGGAAAACGGGATTCGCGTGCACACAGATGATGCTTATGACAGTGACATCCAGCCAACCCTGACCAGGTTGAGCGGACTGTGGAATAAAGACGTGCTGTCAAAGTGGAGATCTCTGGTTATTGGTAACTCGTCGAATTTTATTAAGATGTGCAGGGAGTTGCAGTGTCTGCCCAACATCTGGGCTCTGCATGAATGGGGGAACTGGCTAACACCCATAGGCGTGCACGGCAAAAAGAGGCGCTACGACACAGCATTTTACATCTGCTGCCTACACGAGACTCCATATACGCTTCACGACGACAAGGAAATCGTTCATTTTAAGTGGTCCACTCCCTCAGAAGTGCTACACAGCTACAAATCAAAAGAAATTTGGATAGCTCCACCTCAGTTCTACGACCTTGGCCGAATGTGCCATTTTTCAGCTCTTAGAGATCTCCATCGCTTTGCCTGGCAGAGGTCTTTGGAGGGCTGCGAGCAGTGGCTGCCTATTCACCTGGTGTCACCTGACTGCTTTGCAAGTATTTTACCAGGGGACGCTCTGTACCCAGAGAATGTGGACACTTCTGGAATGAGTGGTGGCGTGATGAAAATTGAGAAAAGTTTTGAAGAGCTCCAGCAGGACAGTGCAAAGATGCACCGCATTGTCGGTCAGGATCCATATTCAATATCTGTCCATATGAACATCAGACCTAAGTATAACCACCTGCCTCCTCTCTGCGGTGAAGATATGGGTGGCACCTCCAAAAACAGTAGTAAACTCTGACACTTACCTGTCGCTACCCACAGTGGCAGGACTGATGGACATTAAGTCTAGATGAATTTTTAATTAGTTCATTTCTACACACTGATTTAACCCTTGACCTATGCAATGTAGTTTGATTATATGGTCCCTTTAACTTATGTTAAAGAAAATACAAAATGACTACTTTGTTGATGTGATGTCTGTTAATGTATTTTTGAAATTGATCATGAACTCTTTTAAAGAAGATTGTTCTGGTTCTTGTCTATATTGTAATACAACACAGTATAGGTCATATTATACAAACAATTTCAAAAAGTTTTCAAGCTTGAATATAGCTATTATCGGCACATTTGTTCTTCATTATTGCAGATGAGATGGTAAAGGGAAACGGTTACTGAACCAGTCTACATCGCTCAGTCAGCTTTGAGTTTGCAGAATACAGGACTCTTAAAAACCTGAAAAGGGTAGTGTACAAATAGTATAATTTTTCTGATTACTTATATGCTAGCCATAGACCAACTAATTACAATGAATTTGACTGTAGCCACTATTGCAAACTTAATATTGGCCAGAATTAACACCCTAGATTTAAATGTTTAAGTACAATGAAAAGTGAATCAAGAATTATTTGATGGAAAAAATAACAAAAACAAAAGCATGTGCATTTCTAGCATTTTTAAATTGAGAAAACAAATGAATTCAGACACAATGTGTGTGAATCTTTTCAAACAGTTTAATCATACATAAACTAAAGATAAACTACCAGATGACTGTTCGTATGTGTCCACTTTGCTAGATTTCTGTAGAGACAGTAGCATGAAATCCTGAACCAACTTAATACAACACACTTGTTTGACATCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10651216_10652913.mRNA True 3723 mRNA 0.42 3 10649543 10653754

Neighbor

gene id symbol gene type direction distance location
CI01000026_10640494_10646504 BAT1, SLC7A9 coding upstream 2703 10640494 ~ 10646840 (+)
CI01000026_10634025_10634327 NA coding upstream 14018 10633454 ~ 10635525 (+)
CI01000026_10547566_10588420 CEP89 coding upstream 60472 10547271 ~ 10589071 (+)
CI01000026_10521984_10543018 RHPN2 coding upstream 106435 10521984 ~ 10543108 (+)
CI01000026_10468478_10482863 LRP3 coding upstream 166588 10468478 ~ 10482955 (+)
CI01000026_10655730_10656230 NA coding downstream 1443 10655197 ~ 10656735 (+)
CI01000026_10670565_10671520 NA coding downstream 15901 10669655 ~ 10671722 (+)
CI01000026_10683580_10685297 PTPMT1 coding downstream 29089 10682843 ~ 10685468 (+)
CI01000026_10688269_10691344 NDUFS3 coding downstream 33174 10686928 ~ 10691424 (+)
CI01000026_10762484_10769015 NA coding downstream 108219 10761973 ~ 10769262 (+)
G133383 NA non-coding upstream 21467 10552960 ~ 10628076 (+)
G133373 NA non-coding upstream 133895 10515420 ~ 10515648 (+)
G133344 NA non-coding upstream 262299 10387042 ~ 10387244 (+)
G133339 NA non-coding upstream 267785 10381554 ~ 10381758 (+)
G133338 NA non-coding upstream 267994 10381254 ~ 10381549 (+)
G133406 NA non-coding downstream 131038 10784792 ~ 10785562 (+)
G133420 NA non-coding downstream 232299 10886053 ~ 10895159 (+)
G133426 NA non-coding downstream 253721 10907475 ~ 10907675 (+)
G133442 NA non-coding downstream 464957 11118711 ~ 11119022 (+)
G133443 NA non-coding downstream 465894 11119648 ~ 11119877 (+)
G133192 NA other upstream 487582 10159819 ~ 10161961 (+)
G132667 NA other upstream 1080383 9568739 ~ 9569160 (+)
G131077 NA other upstream 2142756 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 2350129 8297857 ~ 8307629 (+)
G130967 NA other upstream 2460470 8188374 ~ 8189073 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 417014 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 591179 11241496 ~ 11246204 (+)
G133542 NA other downstream 822363 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033926 nudt19 coding NC_007118.7 CM002891.2 38529263 ~ 38533696 (+)