CI01000026_10683580_10685297 (PTPMT1)


Basic Information

Item Value
gene id CI01000026_10683580_10685297
gene name PTPMT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10682843 ~ 10685468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10683580_10685297.mRNA
CAATAAAAGCCCAAGAGGTCTGAGTGTGTGACATGGAGATAAACATCAAATGTATGCAACTGACAGACTGGTTAACGTGAATTGTGCTTTTAATGTCTGTGCAGTTGTGTTGGTATTAATATGTGTTTTATTATAGAATGAGTTTTATAATGCATTCACTATGGCAAATAAACACAAATACATTTTATATACACTGTAAATGTACATTAACCACATCTACACACACATCATTGTTCGACTGATGTCCATATCCGTGTCTATCCTCAATAAAGAGGTTTGCATATTATTGGGCTATTACTGTGCACGTGTAACAAGACAGCACAAATTCCTTTCCTGCTTTTCTCAGTGAAATACTAGTGATGCTTATTATTGGCATTTTAAGCTGCATTGTTGCATTTTTTTATATTAATGTAAATAATGTAGAGACTCTTGCAAAGGTAGCCCATGCCTTTTATTTTAAGTCTCTTCACTTCACACAAAAATTGTTTCTTCAGTATCAGTGGCATCTGATCAATAGCTAAAGATATGTGTTATTTTCCAATCGCTGGATACAATTGGAATCGATGTAACTGTATCCAGCAAATTAATCTCCAAAACAGAAGAGGGCAATGTCGAGGATCTGTGGCAGGCGTCGAAGAAAAAAAAACTTGCAGCGCGTGTCTTTCATATGCAGTGCCTATGTGGGAGTACGTGGTACAAACTTCTGTGACATGTTTCATTCTTTTACATGAGGAACAATGTCCAGTGTTCTAGCAAGGATTTTATTTTATCCCACACTCGCTTACAATGTTGTCATGGAAAAGATCACCTCCAGGGAATGGTTTAATCGCGTGGATCCGACTGTCATTCTTGGTGCTCTCCCATTCAGGTCAATGACAGAAGAGTTGGTCCAAAAAGAGAAAGTAAGAGGAGTCATAACCATGAATGAAGAATATGAAACAAAATATTTCTGCAATTCACCTGAGGAGTGGCGAGCTGTTGGCGTTGAGCAGATCAGACTCGACACAGTGGACCTGACAGGTGTTCCCAGCCTAGAGCACATCCACAAGGGTGTGGACTTTGCCTTAAGACATCGAGAGCAAGGCACTAGTGTCTATATTCACTGCAAGGCCGGCCGCTCACGCAGTGCAACTATTGCAGCTGCATACCTCATCAGGCTACACTGTTGGAGTCCAGAGGAGGCCTGTAAGATACTGGCCTCAGTCCGGCCTCATGTGCTGATCCGCTCAGCCCAGCTGGAGATGCTGCAGGAGTACTATAAGCAAGTGTGTGCTTCAGAGTCCAGCTAGAAGATACACAATGTGCAAATGCTGCCATTTATGCTGAATCTCATATACTGTACATTGCTAATAAGTTGTTTTTTTCCTTGTCAGAGTGCATATTTTTATATATTCGTTTAAGAATTTGTGTACTATACATAAAGTAGACTCTAATAATGTCCATTAACAGTTACATTGTGA

Function

symbol description
ptpmt1 Predicted to enable phosphatidylglycerophosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human PTPMT1 (protein tyrosine phosphatase mitochondrial 1).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10683580_10685297.mRNA True 1460 mRNA 0.40 4 10682843 10685468

Neighbor

gene id symbol gene type direction distance location
CI01000026_10670565_10671520 NA coding upstream 11121 10669655 ~ 10671722 (+)
CI01000026_10655730_10656230 NA coding upstream 26108 10655197 ~ 10656735 (+)
CI01000026_10651216_10652913 NA coding upstream 29089 10649543 ~ 10653754 (+)
CI01000026_10640494_10646504 BAT1, SLC7A9 coding upstream 36003 10640494 ~ 10646840 (+)
CI01000026_10634025_10634327 NA coding upstream 47318 10633454 ~ 10635525 (+)
CI01000026_10688269_10691344 NDUFS3 coding downstream 1460 10686928 ~ 10691424 (+)
CI01000026_10762484_10769015 NA coding downstream 76505 10761973 ~ 10769262 (+)
CI01000026_10770581_10774331 PSMC3.S, PSMC3, NTHL1.S, PRS6A coding downstream 84423 10769891 ~ 10774331 (+)
CI01000026_10801692_10816684 SYT13 coding downstream 116224 10801692 ~ 10816801 (+)
CI01000026_10827685_10831049 NA coding downstream 140961 10826429 ~ 10831124 (+)
G133383 NA non-coding upstream 54767 10552960 ~ 10628076 (+)
G133373 NA non-coding upstream 167195 10515420 ~ 10515648 (+)
G133344 NA non-coding upstream 295599 10387042 ~ 10387244 (+)
G133339 NA non-coding upstream 301085 10381554 ~ 10381758 (+)
G133338 NA non-coding upstream 301294 10381254 ~ 10381549 (+)
G133406 NA non-coding downstream 99324 10784792 ~ 10785562 (+)
G133420 NA non-coding downstream 200585 10886053 ~ 10895159 (+)
G133426 NA non-coding downstream 222007 10907475 ~ 10907675 (+)
G133442 NA non-coding downstream 433243 11118711 ~ 11119022 (+)
G133443 NA non-coding downstream 434180 11119648 ~ 11119877 (+)
G133192 NA other upstream 520882 10159819 ~ 10161961 (+)
G132667 NA other upstream 1113683 9568739 ~ 9569160 (+)
G131077 NA other upstream 2176056 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 2383429 8297857 ~ 8307629 (+)
G130967 NA other upstream 2493770 8188374 ~ 8189073 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 385300 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 559465 11241496 ~ 11246204 (+)
G133542 NA other downstream 790649 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location