CI01000026_10801692_10816684 (SYT13)


Basic Information

Item Value
gene id CI01000026_10801692_10816684
gene name SYT13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10801692 ~ 10816801 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10801692_10816684.mRNA
ACTGATGGTATGGCTGAAGAAAAATGTCTACCTGATGAGATCTCGGAAGTCCAGAAATGACAGCACCAGCAGTAAGGGATCAGACGTTGGTTTCAGACAGTGCATCACACACGTGCCACTCTATGTCACTAGTATCTCTCCACTCATCTCCTCTCTCCTCCTCTCTCACCATGGAGGCACATATCTGAAGAGTGGATTGTTCCTCCTGTTTTCTCCTCTTCTCTCCTTTGCACTTCATTCGGTGTGTTTGGGTGTCTGCTTCAGGGTGGGAATGCTCGTGTCTGCGACAGCGCTGTTGGGGGCTACGTTGGGGACCGTGTCTGGAGTGTTGACACTGTGTGGTCTCTCCCTGCTTTGTAAGAGCTGTAAGAAGGGGAAACTTGAGAGAGGGGACGAAACTGACCCAGAGAAAGCCAAACCCAGTATCCTGCATACTCTAACACAGTTCAGTGTGCAGAAGTGCACCGAACCCATCCAGCCTCAAGCATCTTTGAAGTTCCCTAAAATCTACCGGCCTAAACCTTCTGTCACTTCTCAAGAGGTAATAAACTACAAAGAACATGGAGCTGCCAATGACACGTCTGCTGCCAAGCTCGACACCTGTAACCAGGCAACCGAACGTGAGGAGGTCTTCTCTCTCCCACGGCAAGCTTCTGCAGATGAAATGTCCTGCATATCTGAGCAAACCGGTGGCATGACGACAAGTAGCTCCATCCTATATCCTAAACTGCACTTCTCAATCAGCCTGCACAAAGAGAGTGGAGAACTACACATCAGCATTGTAGAAGGTAACAAGCATGCATCTACTCTGTTTCTAAAGATAGTGGGGCACCTGTGGATCGCAGCGGATAATATATCAGTGGATGCAGGATGTGAAGGTTATATATCAGGGTGTGTGAGTGTCTCTGAAGAGCAGAAGCACGCTCAGACAGCGGTCCACAAGCTGGCAGCGCATGTGCAGTGGGGAGAGGAGCTGGTGTTCACCCTCCCTGTAGAGGGCACCGAAGACACGGATGGTCTAGATGGAGAGGTGGCCCTCTCCCTTCACTGCTGTGATCGATTCTCCCATAATTCCACTCTGGGCACGATGCGCTTTAAGCTGGCTGATGTAAGCATGATGTTGGATGCTGACTGCTGGGTTGACTTACAGCCACCCAAACAGCAGGAAGTGGCATCATCAGCTGGAGAGCTACTATTGTCACTCAGTTATCTGCCAGCAGCCAATAGACTTGGGGTGGTAGTAATGAAGGCTAGAGGACTTCAGTCAGACAAACTGAAAGACAACATAGATCTTTCAGTAAAGTTGACTTTGAAACATCAAAATGCCAAACTGAAGAAGAAGCAGACACGGAGAGTGAAGCACAAGATGAATCCGGTCTGGAACGAGATGATGATGTTGGAGCTGCCCAGTGAGCTACTGGCTAAATCCAGCGTGGATTTGGAGGTACTGAACCTGGCTAGTCCCGGGACCCTGCTCCCCCTGGGCCGCTGCATGCTGGGGCTCCACACCTCCGGCACTGGCCTGCAGCACTGGAAACAGATGCTAGATAATCCACGCAAGCAAATTGCAATGTGGCATCCTCTATACACCTAAGAATACAGTTTAATATTCTTCAAACCACCACTTAAACGCAATGATTTGTTAAACACGTGGTTGAATTTTTACAATAGTACTCTATTCCTGTACACAGATATGTAGTACTCCAATATA

Function

symbol description
syt13 Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Is expressed in nervous system and trigeminal placode. Orthologous to human SYT13 (synaptotagmin 13).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K19913 SYT13; synaptotagmin-13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10801692_10816684.mRNA True 1711 mRNA 0.49 7 10801692 10816801

Neighbor

gene id symbol gene type direction distance location
CI01000026_10770581_10774331 PSMC3.S, PSMC3, NTHL1.S, PRS6A coding upstream 27361 10769891 ~ 10774331 (+)
CI01000026_10762484_10769015 NA coding upstream 32430 10761973 ~ 10769262 (+)
CI01000026_10688269_10691344 NDUFS3 coding upstream 110268 10686928 ~ 10691424 (+)
CI01000026_10683580_10685297 PTPMT1 coding upstream 116224 10682843 ~ 10685468 (+)
CI01000026_10670565_10671520 NA coding upstream 129970 10669655 ~ 10671722 (+)
CI01000026_10827685_10831049 NA coding downstream 9628 10826429 ~ 10831124 (+)
CI01000026_10831971_10837028 F2 coding downstream 15170 10831971 ~ 10837065 (+)
CI01000026_10841434_10850234 ARHGAP1 coding downstream 24633 10841434 ~ 10850244 (+)
CI01000026_10862630_10863790 HARBI1 coding downstream 45829 10862630 ~ 10864408 (+)
CI01000026_10865287_10867398 NA coding downstream 48486 10865287 ~ 10867434 (+)
G133406 NA non-coding upstream 16130 10784792 ~ 10785562 (+)
G133383 NA non-coding upstream 173616 10552960 ~ 10628076 (+)
G133373 NA non-coding upstream 286044 10515420 ~ 10515648 (+)
G133344 NA non-coding upstream 414448 10387042 ~ 10387244 (+)
G133339 NA non-coding upstream 419934 10381554 ~ 10381758 (+)
G133420 NA non-coding downstream 69252 10886053 ~ 10895159 (+)
G133426 NA non-coding downstream 90674 10907475 ~ 10907675 (+)
G133442 NA non-coding downstream 301910 11118711 ~ 11119022 (+)
G133443 NA non-coding downstream 302847 11119648 ~ 11119877 (+)
G133444 NA non-coding downstream 303708 11120509 ~ 11120750 (+)
G133192 NA other upstream 639731 10159819 ~ 10161961 (+)
G132667 NA other upstream 1232532 9568739 ~ 9569160 (+)
G131077 NA other upstream 2294905 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 2502278 8297857 ~ 8307629 (+)
G130967 NA other upstream 2612619 8188374 ~ 8189073 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 253967 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 428132 11241496 ~ 11246204 (+)
G133542 NA other downstream 659316 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location