CI01000026_10930798_10950198 (CREB3L1)


Basic Information

Item Value
gene id CI01000026_10930798_10950198
gene name CREB3L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10930798 ~ 10950313 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_10930798_10950198.mRNA
AGACACATTCTTCCAGTTCTTCCAAGTTCTTCTGGAATTCTTCCTTAAAGGAGCTTTCCAGATGTGGAATTTCAGGACTCTTGCATCAGCACCCCAGCATTGCATCATTACCATTGGCTCCTGTAAGGTGTGCCATTCACACACCTGTCCCCATTCACCAGGATGTAAACATGATCAGGTCCTCTCACACCTTTGTCACACCCTCGCTCGGCAAACACACATTCGCATACCCTCAGTGCAGAAACACCACTTCTCCGAGCAGATGGAGGACTTCTCCAATGACCTTTTCAACAGTTTCTTTGATGATCATCTGTTGGCGGAGAGGAACCCATTGTTAGATATGGATCTGGACCCTCCAAACCCAGCTATCCAGGCAGAACACAGCTACTCTCTCAGTGGTGACTCTGCCCCTCAGAGCCCCTCCATGCCCATCAAATCAGATGATGATGCAGTTCAAAGAACTGATGGAAAAATTTGCAAACATGTTCCTTTAGGATTACAGCAGCATTTATACTTTAGGGGTACAACCATATTAGCAGGTAACTTTAAACCCGCTAATGAGCATCGCTCTTCCGTCTCTGCCGGCCTAGAGTCGCCCCACTATGATACCTGCTGTCCTGAGAGACATCAAAGCCTTACAGTGCCCTATGGGCAGGACACAGTAGCATCTGTAGAGTATAAGGAGGGACTTTGGAGATTTGCATTATATAAAGAGAGTGAAGATGAGAATGAGACATTCCTTATAGATCCAAGAGATGGAGATAACCCCTCTGACATATCAGATTTTTTGAGAAAGTGTGTATTTGGTCTAATCATGTTTGAAAAACCTGTAAAGAAAACTAATCCCTTATTCACAATAGAGACTGTGCATAAGAGTGTGTTTGCTTTAGTGCACCCTGTTGAAGAACAGAGTCTTAAGGATCTTACAGCCATTCTAGTGAAGCAGGAGCCCAGCCTGATGTCAGAGAACTGCCCTGATACAGCGTCCCCTCTGGCCAACACCAGCACCTGCTCACACCCCCTCACTCTTGCCCCTCCGCCACAGAGGAACCACACAGGGGAAAAGGGTTCCAAAGGCCTGAGCTCAAACTCCATTCCTGCCATCAAAGCAGAGCCCAGAGAGGTGAACCAGTTCCTCAATGTGCCCTCAGATGAACATCTGCGGTTGCCGCCAACTCCTCCCAGCAGCCATGGAAGCGACAGCGATGGGTCCCAGAGCCCACATTCACTGCCACCATTAAGCCCTGGCCAGCTGCAGAGCCCACATTCACTGCCTCCCTCCAGCCCGGCCCGGCTACAGGCCCGAACCTCCACAGCCATCTCCTCGTCCCCTCTCCTCACTGCCCCGCATAAGCTGCAAGGAACATCAGGCCCTTTGATGCTGACAGAGGAAGAGAAGAGGACTTTGATCGCTGAGGGATATCCTGTCCCCAACAAACTACCGCTCACCAAAACCGAGGAGAAAGCCCTCAAACGGGTGCGCAGGAAAATAAAAAACAAGATCTCAGCACAGGAAAGCCGCAGGAAGAAGAAGGAATACGTGGAGTGTTTGGAGAAAAAAGTGGAGAACTACACTTCAGAGAACAATGAACTTTGGAAAAAAGTTGAGACGCTTGAGAATGCCAACAGGTGGATTTTTATCAATTTAATTGTAACCGTATTTGCGGTCTCTACTCCAACAGCTACAAAGACTGCAGGCTCTAGTGAGCGGGAAAGTGCCTCGATCCTGCAAGATCGCCTCCACGCAGACCGGAACCTGCCTCATGGTGGTGGCGCTGTGTTTTGTGTTGGTGCTGGGCTCGTTGGCTCCCTGCCTGCCCGAGCTCTCCCTCTACTCTTCCTCCTTATCCTCATCATCCTCACACACGTCCGCTCCCGCAGCCTGCTCTTCTATGACGAGGGTGGCCCAGTGGAGGACGGCCACAGGGGCGTGCTGAGTGTGGAGAGGATGGAGGGGGTGCCGCGACACGTACAGGACCTGAAGGACAGCCACGAGCAGGATCATTCTGCTCTCGTGAGCAGGTACTTGAGCCAGGCTCAACCAGAGCCTGCAAGCTACAGCAACACATCCGCGGCCCCACTCCGTCCCACTGAACCACACTACCACTCGAGAAAGCGGGATCCTGAGGGAGGAGCTGAATATTTCTAACCCCTCTGTGTGGAGCTGCCTCTGTCACCCAGGCCTCCACTGAAATCTAATGATCCTGGACTACTCGGCCCTCGACCCTTACCGTTACAGATCCTGAGTCTCCTGACCTGCCCTA

Function

symbol description
creb3l1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in axial chorda mesoderm; notochord; shield; and tail bud. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 16. Orthologous to human CREB3L1 (cAMP responsive element binding protein 3 like 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_10930798_10950198.mRNA True 2264 mRNA 0.51 17 10930798 10950313

Neighbor

gene id symbol gene type direction distance location
CI01000026_10917489_10918872 NA coding upstream 11602 10915851 ~ 10919196 (+)
CI01000026_10871203_10872334 NA coding upstream 58459 10871203 ~ 10872339 (+)
CI01000026_10865287_10867398 NA coding upstream 63364 10865287 ~ 10867434 (+)
CI01000026_10862630_10863790 HARBI1 coding upstream 66390 10862630 ~ 10864408 (+)
CI01000026_10841434_10850234 ARHGAP1 coding upstream 80554 10841434 ~ 10850244 (+)
CI01000026_10955581_10955874 NA coding downstream 4501 10954814 ~ 10955913 (+)
CI01000026_11012960_11021926 NA coding downstream 61027 11011340 ~ 11021926 (+)
CI01000026_11032284_11063044 NA coding downstream 81366 11031679 ~ 11063625 (+)
CI01000026_11075931_11078249 MDK, MDKA coding downstream 125471 11075784 ~ 11079080 (+)
CI01000026_11203781_11212074 NA coding downstream 253468 11203781 ~ 11212582 (+)
G133426 NA non-coding upstream 23123 10907475 ~ 10907675 (+)
G133420 NA non-coding upstream 35639 10886053 ~ 10895159 (+)
G133406 NA non-coding upstream 145236 10784792 ~ 10785562 (+)
G133383 NA non-coding upstream 302722 10552960 ~ 10628076 (+)
G133373 NA non-coding upstream 415150 10515420 ~ 10515648 (+)
G133442 NA non-coding downstream 168398 11118711 ~ 11119022 (+)
G133443 NA non-coding downstream 169335 11119648 ~ 11119877 (+)
G133444 NA non-coding downstream 170196 11120509 ~ 11120750 (+)
G133454 NA non-coding downstream 193996 11144309 ~ 11153397 (+)
G133491 NA non-coding downstream 243048 11193361 ~ 11193825 (+)
G133192 NA other upstream 768837 10159819 ~ 10161961 (+)
G132667 NA other upstream 1361638 9568739 ~ 9569160 (+)
G131077 NA other upstream 2424011 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 2631384 8297857 ~ 8307629 (+)
G130967 NA other upstream 2741725 8188374 ~ 8189073 (+)
CI01000026_11241496_11246081 NA other downstream 294620 11241496 ~ 11246204 (+)
G133542 NA other downstream 525804 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location