CI01000026_12884442_12887984 (ARL8, ARL5B)


Basic Information

Item Value
gene id CI01000026_12884442_12887984
gene name ARL8, ARL5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12883771 ~ 12887984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12884442_12887984.mRNA
AACACAAGGTGATAATTGTGGGGCTGGACAATGCTGGAAAGACCACTATACTTTATCAATTTTTAATGAATGAGGTGGTGCACACGTCTCCTACGATTGGCAGCAATGTGGAAGAAATAGTGGTGAAGAAAACCCACTTCCTGATGTGGGATATCGGTGGTCAGGAGAGTCTCCGTGCCTCTTGGAACACATACTACTCCAACACTGAGTTCATCATACTGGTAGTGGACAGTACTGACAGAGAGAGACTAGCCATTTCTAAAGAAGAGCTGTACAGAATGCTAGCACACGAGGATCTGCGCAAAGCTGCGGTGTTGATCTTTGCTAATAAGCAAGACATGAAGGGCTGTATGTCTGCAGCAGAGATTTCCAAATACCTGACCCTCAGCTCCATCAAGGATCATCCCTGGCACATCCAGTCCTGCTGTGCGCTAACTGGAGAAGGACTTCATGGATTCAGTACAGACTTCATAAAAATCATGGATGAATCTGATCACAACAAACAGTAATGCTGTCTACTGGATATGCTACCAACGCAATGTTAAAGGTGCAGTGTGTAAATTTTAGCACCATCTAGCGGTGAGGTTGCAAACTGCACCACTACAAACTACACCCCTCCTTTTCGGAGAAGCTACGGTGGCCGTCTGGCCGACAGTCACACAAGACAAAGATGTCATCGTCTGAGACGGCAGAGAGTACAATAGCCAGTGAAGCAATGAGGTTTCTTCTTACTTCTAACAAAGAACGGTCTCTGCTTTTAATAAACCAGACGACTAAGTACTACTACAATTTTTGCGTGTATTTATTTTAGTGACGATGCAAGCTGCCTCTAAAAACATGAACGATTTAGAAGAACAACAGCATAGTGACTAAACGCGCTCTGTAGAGCAGTTTGTCCATTTAGGGCTGCTGTAGAAACATGCCGGCACAAAATGACGACTTGACATGGAGGGGGGACCCGTGGTGTATGAGATAGAAATGGCTCTTTCGGTAATACAAACATAACAGTTCATCATGTAAGGTCTTTATACACCACTGAAAACATAGTTATATATATTATATTGCATTTCTGAGTTTAACATGACCAATGAAATCTTTAGAATCAGCTGCAGGGTGGGGTTTGTGCTTATTAACGCTTTGTATCCCTTTCTTTGCCAGATACTTTTGCTGGTAGATTAAA

Function

symbol description
arl8 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Orthologous to human ARL5B (ADP ribosylation factor like GTPase 5B).
arl5b Predicted to enable GTP binding activity. Involved in protein localization to Golgi membrane. Predicted to be active in trans-Golgi network.

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K07950 ARL5B; ADP-ribosylation factor-like protein 5B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12884442_12887984.mRNA True 1180 mRNA 0.43 5 12883771 12887984

Neighbor

gene id symbol gene type direction distance location
CI01000026_12792682_12819124 MALRD1 coding downstream 64647 12792682 ~ 12819124 (-)
CI01000026_12728675_12752693 NA coding downstream 131078 12728589 ~ 12752693 (-)
CI01000026_12712643_12726107 NFX1 coding downstream 157664 12712599 ~ 12726107 (-)
CI01000026_12663161_12672818 SMARCD3A, SMARCD3B, SMARCD3 coding downstream 210953 12661264 ~ 12672818 (-)
CI01000026_12639230_12645878 ASB10, ABCF2B, ABCF2, ABCF2A coding downstream 237893 12638945 ~ 12645878 (-)
CI01000026_12900826_12904700 NA coding upstream 12804 12900788 ~ 12905085 (-)
CI01000026_12934742_12962957 DKFZP468J242, VPS35 coding upstream 46758 12934742 ~ 12962957 (-)
CI01000026_12985635_12997297 NA coding upstream 97378 12985362 ~ 12997297 (-)
CI01000026_13010221_13016325 CLG3H16ORF87, C5H16ORF87 coding upstream 121873 13009857 ~ 13016325 (-)
CI01000026_13033698_13034704 NA coding upstream 145641 13033625 ~ 13035620 (-)
G134931 NA non-coding downstream 12032 12867251 ~ 12871739 (-)
G134921 NA non-coding downstream 33991 12849353 ~ 12849780 (-)
G134916 NA non-coding downstream 50339 12833186 ~ 12833432 (-)
G134680 NA non-coding downstream 100778 12782715 ~ 12782993 (-)
G134678 NA non-coding downstream 246973 12636585 ~ 12636798 (-)
G134986 NA non-coding upstream 129884 13017868 ~ 13018078 (-)
G135007 NA non-coding upstream 307283 13195267 ~ 13195982 (-)
CI01000026_13299234_13300178 NA non-coding upstream 412586 13298482 ~ 13300940 (-)
G135043 NA non-coding upstream 416311 13304295 ~ 13304578 (-)
G135053 NA non-coding upstream 437207 13325191 ~ 13325401 (-)
G133802 NA other downstream 1576590 11301915 ~ 11307181 (-)
G133790 NA other downstream 2046166 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 2093617 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 2534814 10347746 ~ 10351783 (-)
G132721 NA other downstream 3333127 9550030 ~ 9550644 (-)
G136110 NA other upstream 1666933 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 3868745 16756729 ~ 16761341 (-)
G137667 NA other upstream 3918380 16806364 ~ 16808372 (-)
G137914 NA other upstream 4095267 16983251 ~ 16984352 (-)
G137967 NA other upstream 4180364 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034989 arl8 coding NC_007118.7 CM002891.2 41713920 ~ 41746427 (-)