G134931


Basic Information

Item Value
gene id G134931
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12867251 ~ 12871739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU153458
TCACAGGTAATATATTTATTGATTTGTGTTTTTCATTCATGAAATATAAATCTGTATTGCTTAGGATAATGATAATAATGAGAAGGGGGAAAAAGCTGCACATTCCTCATACCCATCACCACATGCCAATCAATGTGATTACTGTTACAGTACACAATTTCCTCATTCGTAAGTAGCTTTGAATAAAAGCGTATGCTAAAGAAATCAATTATATGTAATGTAATTAATGAAATCTCGAAGTAAGATCACCTCTTTGTTTTAATAAAGAGTTCCTGACACCACAAGAGCAATCAAAGCTATCAGACCACAGGTTACACCCTCCTTTTCTCCTCCAGATGTCGCAAACATTTGATTTATTTCGACAGGATTTGCCAGTTGCCAAGTCTTTGTTTGTCCAACTCTCACCCAGGAAAGATTACCTTCTGTCATTATAGCTACAGAGTTTGTCGCAGTCATGCCAACAAGTGGTGGGCTTGTGAATGGTGGGAGGCGGACAGGTTTTATCTGACCACCACTGAACACACCGGACTGGACACAGTATAAAATCTGACAGCCATCACTGATGGCAGCAAGATTTTGGCTGAACTGAGGTGGGCAGCGAGATTGACCCATTGCAAAAGGATTGCCAGACTGGCAGCTGAAGAAGCCACCAAAAGGCACAGAGTATTTTGTTGCTGTCGCATAGTCATTGCTCAGACAAACTGTCATGCCACTAGACAAAAATTTTTGGACAAAGAAATTTGAAGGACAGCTGTAAGATTTGGTAAATGGGTTTTGCAAAGATGATCCATATAGACCTCCAAAGAGGTATCCAGAGTTCAGAGGTGTTTTCTGAGTTGTGGGACACCAGTAGGTGTCCACTTTTGCACGACGGACATAATAAACATCATTACATGTTTGGTCACAACAAGTAGACAACCATAAGAAACCACATGATTTACAGGACTTTTGGCACTCATTACGAGTATAACCTTTTTCTACTGTCTCAGAGCGTAACAGGGTGGTGTTGTACTGCACAGGGCAAGAATAATCACCAGTGGCTGGGTTTTTTTGTGCTGTCTCATCACAGATGGTATTTCCATCTGATGTCAATGGAGTGCATCGTTGGTAAATGCCACCAAAGCTAAGATTGGTGACTGGTCCTTCACAGGAAGCATCATCTACATTTGCCTGGAAGTTGAAGTTTTTGGAATCTGGATTTATACACCCTGGAATGGTATTTACTTTATAGTATTTCTCTGCAGCCTGAGAAACTAACAATGCTAATTCATTTACTGTTGGTGCTGGGAGGTCTGGGAGTGTGGATGGATTAAGAAAATAGTGCAGCGGCAGGCCAGAGCGGTCAATAGCCACCAGATTATTGAGCGTACTCTCTTGCCACTTCTGCAGAGTGATGCCTGGGTAGAATAAAGCTCCACCATGGCTCTGGATGAAAGAATATGTGATGTTACCCTGATAACCACTGGTTTTAGAGGTTCCCTGGGATGTACTGGCACCAATATCAAATTTAACTTTTTCAAAGAAGGAACCGCCTGCTGAAGCAGAAATAGAAGACAATTCTAACAGATTCCTCTGGATATAAGATGTTTTTAGATATTCCTCTTGCACCAAAGTAGCACCAGCATCAACACTTGTGATGACATGAGTACCATAATCAAGTATGAGTTTCTCTGACAGATATGTTGCTAGACGTGTTTGATTGTTCTTAATAGCGTCTGTGATTTCCTCTGCCTGTTGAGCAAAGCGGGAGTCCAGAGGGAAGTTGGGATATGCCTTTACTGTGTACAGATGGTTACGGACTTGAACTCGTGCTGTTACAGCACTCTCTTTCACTTGGTGAGTTTTAATACGTTGGCTTTCTTTAGAGAATTTTCCATTGAGCACCACAAGAAAGGAAGCATCTGCATTTATGGAGCTTGAAGTGGAGCTTGTCTGGTCCATCCATGACATGATAATCTCAGAGTTTGTTTCCACTCCGCTCACTTTTTGTGGAATGACAAAGACTTCATCTGGAATGATATAGACACCATCTTCTGTGGTCTGACACTGGGAATAGCTCAAATTCATCACCCGTCCCATGTCTATGTTGCGCAGGTTATCCCAGCCTCCACCTGGTAGAACCTCCAGCGCTATTGAAGATGGGTTTTTCAGGCATGCATTGAGCCCATTACTAGGATGAATGAGTGGATAAAGGTTGCAGATATTGATGCAACAGCAGAGTAACAGCAGACAGAAGGCTCTCGACTCCATGACTGTCTG

Function

NR:

description
PREDICTED: ubiquitin-like modifier-activating enzyme 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153458 True 2259 lncRNA 0.42 2 12867251 12871739

Neighbor

gene id symbol gene type direction distance location
CI01000026_12792682_12819124 MALRD1 coding downstream 48127 12792682 ~ 12819124 (-)
CI01000026_12728675_12752693 NA coding downstream 114558 12728589 ~ 12752693 (-)
CI01000026_12712643_12726107 NFX1 coding downstream 141144 12712599 ~ 12726107 (-)
CI01000026_12663161_12672818 SMARCD3A, SMARCD3B, SMARCD3 coding downstream 194433 12661264 ~ 12672818 (-)
CI01000026_12639230_12645878 ASB10, ABCF2B, ABCF2, ABCF2A coding downstream 221373 12638945 ~ 12645878 (-)
CI01000026_12884442_12887984 ARL8, ARL5B coding upstream 12032 12883771 ~ 12887984 (-)
CI01000026_12900826_12904700 NA coding upstream 29049 12900788 ~ 12905085 (-)
CI01000026_12934742_12962957 DKFZP468J242, VPS35 coding upstream 63003 12934742 ~ 12962957 (-)
CI01000026_12985635_12997297 NA coding upstream 113623 12985362 ~ 12997297 (-)
CI01000026_13010221_13016325 CLG3H16ORF87, C5H16ORF87 coding upstream 138118 13009857 ~ 13016325 (-)
G134921 NA non-coding downstream 17471 12849353 ~ 12849780 (-)
G134916 NA non-coding downstream 33819 12833186 ~ 12833432 (-)
G134680 NA non-coding downstream 84258 12782715 ~ 12782993 (-)
G134678 NA non-coding downstream 230453 12636585 ~ 12636798 (-)
G134676 NA non-coding downstream 231551 12635318 ~ 12635700 (-)
G134986 NA non-coding upstream 146129 13017868 ~ 13018078 (-)
G135007 NA non-coding upstream 323528 13195267 ~ 13195982 (-)
CI01000026_13299234_13300178 NA non-coding upstream 428831 13298482 ~ 13300940 (-)
G135043 NA non-coding upstream 432556 13304295 ~ 13304578 (-)
G135053 NA non-coding upstream 453452 13325191 ~ 13325401 (-)
G133802 NA other downstream 1560070 11301915 ~ 11307181 (-)
G133790 NA other downstream 2029646 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 2077097 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 2518294 10347746 ~ 10351783 (-)
G132721 NA other downstream 3316607 9550030 ~ 9550644 (-)
G136110 NA other upstream 1683178 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 3884990 16756729 ~ 16761341 (-)
G137667 NA other upstream 3934625 16806364 ~ 16808372 (-)
G137914 NA other upstream 4111512 16983251 ~ 16984352 (-)
G137967 NA other upstream 4196609 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036518 mpeg1.3 coding NC_007119.7 CM002892.2 29655948 ~ 29658171 (-)