XLOC_008405 (clptm1)


Basic Information

Item Value
gene id XLOC_008405
gene name clptm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17074185 ~ 17095655 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016822
ACATTACAGTGTGCGATAGAGACAGGTAAGATGGCGGCGCAGGAGACTCAAGCAACACAGCAGTCCTCCGTAAGCAACGGAGAGGTGAGCAGTAATGGGGCAGCTGCCTCTGGTCAGGTAGCTCAGACAGGTGCAACTGCACAGGACCcccaacaacagcaacaacaacagcccAGTGCCTGGCAGGTGATTAAAGGTGTCCTCTTTAGGATTTTTATCATCTGGGCTATTAGCAGCTGGTTTCGCAGAGGTCCATCAACCCCAGATCCCAACACTCCTGCTGGAGCTCCGCGAGTGCCCAGCCGAAACCTCTTCCCTAAGGACACTCTTATGgatttatatgtgtatatctcaGAGAGCGAGATATTTACAGATTTTAACAATACAGAAGAACTGTTCTGGTACCAGCAAGATCTGGTTTATGGAGAGTGGACCACAGGGGACTCGGGAGATGGCTGCTATGAATATTACAAAGAGCTGGACCTCTCTGAGAGTGTGAAGCAGAATGGCTCAATATACATGCACATTTACTTCACCAAGAGTGGCTTCCACCCAGACCCCAAACGCAAGGGCCAGTACCGCAGACTATCCACAGTCCATGCCACTCGAATGCTCAATAAGTACAAGAGGAGGAAGTTCCTCAAGACCAAAAACCTATTGACAGGAGAAACTGAAGCTGATCCAGAAATGATCAAGAGAGCTGAGAGTCATGGCCCTGTTGAGATCATTTCCCATTGGCATCCCAATCTCACTATTAACATGGTAGATGATCACACGGCTTGGGTGAAAGGCTCTGTGCCCCCTCCCCTTGACCAGCATGTGAAGTTTGATGCAGTGAGTGGAGACTACTATCCCATTGTTTACTTCAACGACTACTGGAACCTGCAGAAGGACTATTACCCCATAAATGACACCCTGCTAAACCTGCCCCTTCGTCTCACATACTGCCCCCTGTCCTTGTGGCGCTGGCAGTTGTATGCGGCCCAGAGTGCCCGCTCTCCCTGGAACTTCCTGGGCGAGGACACTTATGAGCAGTCAGACGAGGACCAAGATTCTGTTAAGGTGGCTCTGCTTGAAACCAACCCCTACCTCCTAGGCCTGACCATTGTAGTTTCCATCGTCCACAGCATTTTTGAGTTCCTGGCCTTTAAGAATGATATCCAGTTCTGGAACAGCCGTCAGTCTCTGGAGGGACTCTCCGTACGCTCCATCATATTCGGAGTGTTCCAGTCTCTTGTAGTGCTGCTTTATATCCTGGACAACGAGACCAACTTTGTGGTCCAGGTCAGCGTATTCATTGGCCTGCTCATCGACTTCTGGAAGATCACCAAAGTCATGGACGTCAGGctgGACAGAGAGAACAGGATTGCTGGAATTGTCCCAAGATTAGTATTCAAAGACAAGTCCACATATGTGGAGTCTTCAACCAAAATCTATGATGATatGGCCTTTAAGTACCTGTCCTGGCTGTTGTACCCTCTGTTTGGATGCTATGCAGTGTATAGCTTATTATATGTGGAACACAAGGGCTGGTACTCGTGGGTGCTCAGTATGCTTTATGGGTTCTTGTTAACCTTTGGTTTCATCACCATGACGCCGCAGCTCTTCATCAACTACAAGATGAAGTCAGTAGCCCATCTTCCCTGGAGGATGCTCACCTACAAGGCTCTGAATACCTTTATAGATGACTTGTTTGCCTTCGTCATCAAGATGCCAATGATGTACAGAATAGGTTGTCTCAGAGATGATGTGGTCTTCTTCATCTATCTGTACCAGCGTTGGATTTACAGAGTGGATCCCAACCGTGTGAATGAGTTCGGGACCAGCGGTGTGGACCACAGCAAGGACAGCTCAGCCCAGCCGGCAGCTGGCGAAACACCTGCTGCCATCACAGAAAAACCTGAGGGGGAGAAGAAGAATGATTAACCCCCTTTTAACCCCCCCTCCTCTCCCTTGTCCTCTGGTCTTGTTGAAGGTGCATGATGCATCTTCGAGGCTGAGTTTGTTTAATTGTCAGGGAAGGGAACTGGATTAATGGTATTACGTAAAagactgcaggaaaaaaaaaagttcagttcaACGATCCTCCGTTGTGTGGGatccacatgaaaaaaatatatttaatgtagAATTCCTAAaatcattcttctttttttccaatCTCCCATATTTTTGCAGTCCAAGTGAAGTAAAATGTGATGTACTGTATTGTATATTTTTGGGTTGGAAACACTAATAACATGAAGGGTTAGGTGGTCCGAGATTAAATCCCATCGGCTGGAGTGAA

Function

symbol description
clptm1 Predicted to act upstream of or within cell differentiation. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Is expressed in immature eye; lens; mesoderm; pronephric duct; and somite. Orthologous to human CLPTM1 (CLPTM1 regulator of GABA type A receptor forward trafficking).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-265 Predicted to act upstream of or within cell differentiation. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Is expressed in immature eye; lens; mesoderm; pronephric duct; and somite. Orthologous to human CLPTM1 (CLPTM1 regulator of GABA type A receptor forward trafficking).

Ensembl:

ensembl_id ENSDARG00000018973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016822 True 2287 mRNA 0.47 14 17074185 17095655

Neighbor

gene id symbol gene type direction distance location
XLOC_008404 plin2 coding upstream 25363 17030473 ~ 17048822 (+)
XLOC_008403 BX571762.2 coding upstream 153198 16914731 ~ 16920987 (+)
XLOC_008402 ypel2b coding upstream 159540 16897554 ~ 16914645 (+)
XLOC_008401 gdpd1 coding upstream 179310 16886196 ~ 16894875 (+)
XLOC_008400 BX649487.2 coding upstream 244309 16829762 ~ 16829876 (+)
XLOC_008406 relb coding downstream 4757 17100412 ~ 17125217 (+)
XLOC_008407 si:ch73-223p23.2 coding downstream 155536 17251191 ~ 17255307 (+)
XLOC_008408 dhx40 coding downstream 162591 17258246 ~ 17285188 (+)
XLOC_008409 cltcb coding downstream 190334 17285989 ~ 17340198 (+)
XLOC_008410 vmp1 coding downstream 247664 17343319 ~ 17373352 (+)
XLOC_008463 BX663520.1 misc downstream 4156536 21252191 ~ 21252282 (+)
XLOC_008398 CR847990.1 non-coding upstream 555102 16518967 ~ 16519083 (+)
XLOC_008394 BX511308.1 non-coding upstream 1028681 16035869 ~ 16045504 (+)
XLOC_008393 NA non-coding upstream 1055396 15987054 ~ 16018789 (+)
XLOC_008411 dre-mir-21-2 non-coding downstream 278134 17373789 ~ 17373915 (+)
XLOC_008412 CR848791.3 non-coding downstream 280712 17376367 ~ 17378063 (+)
XLOC_008419 NA non-coding downstream 790543 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 991047 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 1289935 18385590 ~ 18401208 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02122241_02132642 CLPTM1 coding CI01000053 null 2121629 ~ 2132787 (-)
bowfin (Amia calva) AMCG00013484 clptm1,LOC107582636 coding CM030125.1 CM030125.1 32545177 ~ 32565354 (-)