XLOC_008406 (relb)


Basic Information

Item Value
gene id XLOC_008406
gene name relb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17100412 ~ 17125217 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016823
AGAAAAGTGAAACGAGCAAACAGAGCGAATTTTGATGTCAGTAGTTTGTCCACGAGACCGAGATAACTTACAGAGATCTCTCTGCTTCTCTCGGGATTTCTTCCCTAAAAAGCTTCTGTTAATTTGACAGCCTTCCAAAAAACGACGCACCCGGAAATGAGTGCGTAACGCGGGCCTGGCGAGAAGTGCTCCGTTTCTGGTTTTCGGGCAGCAGTTCAGCACAACAACGACTGCGAGAGCGCGTGAAGGAGCCGAAGAGACTTTGGTTTCTCAATTTGTCTTGCAATGAAAGACATGAACATTCCGAACGGCAAAGCGGCTAATGGAGGTCAGTGTCTTTCACCTGGAGCTAGACTTAATAAATGAGTATCTATTGGAGAAGACAAACAAGGAGTTGACAATAACGCTGCCTGgtcctcctcctccacctgtgGATCAGGACATCCAGGCAGTTAATCCACCGCCCAGGAACAGGCGAACCACCAACAATCCAGTGCTGGTATCTAGAGGAACAGCTCCACAGAATTCACTCAGCTTTGACCAGGTCCCCACTGCGCACGCTGATGGTATGGCAGCGATGCAATCCATTCGAGGTGCTAAAGGGTCATCTCAGCGACGGGGACTGGCATCTGTAGCAACCCAGCGTCGTATTCCTCAGCAGACAGGTACAGAACATCTGGAGATGTTTCTGGAAAAGCCAGACCTGGTGGTGGTGGAGCAGCCCAAGGAGCGCGGCATGCGTTTCCGCTATGAGTGTGAGGGGCGTTCAGCAGGCAGCATCCTTGGAGCCTCCAGCACAGACTCTAACAAGACCTTGCCTGCCATTGAAatccaaGGGCCTATTGACAATATCAAGAAAGTCATGGTCACGGTGTCTCTTGTGACAAAGGACATCCCATACCGTCCACACCCCCACTGCTTGGTCGGGAAAGACTGTACAGATGGCATTTGTGTCATACACATTAATCCTCACAGTAATCGTCGTCACAGTTTTGCAAATCTTGGCATCCAGTGTGTGCGGAGGAAAGAACTAGATGCCTCACTTCAGAAGAGGAGGAATAAAAATATCGACCCTTTTAACACGGGGCACAGTAAGAGCATAGAAGACATGGACATGAACGTGGTCAGACTGTGTTTTCAGTGTGAGCTGGAACAAAAGAACGGAGATAGGATCACTCTCAATCCTGTGGTTTCCAACCCCATTTACGACAAGAaGGCAACCACTACTGCAGAGCTGAAAATCAATCGGCTTAATGTGATTAGAGGACCCTGCACGGGAAAGACAGAGATTTACATGCTCTGTGACAAAGTGCAAAAAGATGACATTGAGATCATTTTCAGCATCGAGGACTGGGAGGCCAAAGCAGAGTTTGCTCAGACAGATGTCCATAGACAAATAGCTATTGTCTTCAAGTCGCCACCATTCCGGGAGCAGGATATTTTGGAAGAAACGGAGGTGAATGTGTGTCTGCGCCGCATGTCTGATCGGATGGACAGTGAGCCTGTCAAGTTCACCTATGTTCCAGACAATGCAGATCCCTATGGAGTGAACCGCAAGAGGAAAATGAAAACTGATGTGAAGTTCAGCGAGTCCTGCAACATTCCTCAAAgtCAAGACTTGCTCATGAATGATCCTGGCACATCTCAACAATTTGATCCATTCTACCCCACCCCAGAGTGTAATGTCTCGAGTGCTCCCATCGCAGTCCCTCTTCAGGATGGTGGCATCCAAATGCCATCTCTAACTGTGGAGGAGATGTTCTATAACGAAGACTTTAAACAAGAGGACGGTTGTATTAGCATGGACCAAGAGGCTTTGAGCTCCTTCCTCCTCCAGTGCTTGGGTCCGCATGGTTCTGACCAGGTCTACAACCAACTCAGTTCTGAATTAAACCTTGTTTTGGATGGCGCAGATATAAATGTTAACCAAACAATGTTAAACATGGCATCCATAAACGATGCACACTTCAGTCAGATGGTGAGTGAGAATCAGCCTTATCCAGCAGATCTGGAGAACATTGAAGAGTTCATGTTCTCCTCTGTGAAGACTGAGAACAACCCGGACCTTTGAATGCTGAGATGAACAGTCGCTGCTgactttttaaacatatttttgaggCGGTGTTCTGTCAATTCGTCCTActttgtcagattgtcctacctcccattcaaaaactAGGTAGCACATCTTGATGGTGAAATATGCCATAAATCAGCTTGTGCTAACAGCGTCAATGTTTGATGTGGAGTGATATGAGGACTTGGCCTACCCCTGTCCTTAACCTTAACCTTAGAGCCCTTCAAATACAGAGTAGGATTAAATGTCAGAACACTGCAATTGACTGCCAGTGAGTTTTGGTTGCCACTATTTGACTTTCAATTTGGTAAGAAATGTTCAGTACTTATGAAGTAACTGAGGCTAATGACCGTTAGCAAACGGTAGGCCTAGCATGTAGCCTATGTGTTTTGTAAAGGGAGCAACAGATACTGCTTATCTGCTTGTAATGTGCCAGTTGTGAATTTTATTTGGTTGTTGCtaatttattgtgtgtgtttctgagctTAGGTTTGTAGTATTGTGCTTGTCCCCAATCCAAATTCACTAACGTGTGTTACTTGAATCGTGATATAACATTTCTGAAGAGCTGAGAAATTTCAATTAACAGCATTAAAGAGGAAAAATACgacatttaaagagatagttcacccaaaactgaaattcctgtcatcatttactctttaaTCTTTCACACTCgtccaacacaaaagaagatatttgcttttcttactatgaaagtcaCAGGTTTTAAGctgcttatattattttgtgttcaacagaatagagAAACCGAAGTGAACCCcccttaagggtgagtaaataatgaggaaatTTGtagtttttggtgaactatgaTAAAGACAAACACAATAAACCTGCCAGTGGCCGTTTCCTATCTGGAAATGTAGTGCATTATCATGATATCTGGTTTTCCAGTGAGCACTTTTGCATAGGCTTTGGGTTTACATGTAGAACCTGACTGACATCTAAATCTAccaatcacagtttgttttgttcaGTGTCATGTAAATGTCATATGTTATTCAAAATACATCATATAAATGACAGATTAAATGAACCATAAACAATTGCTATAAAACATTCTCTCAGCATCTAAAGGCAGTGGAGGTCACGTGCTCTGGTTCCTGACACAGTATGGTACTTTGGTCAAGTCGGTGGCTTAGGGAGCGTTTTAGTTTCATTGGGAATCGCCACATTACTACTTCAATCTAAACCCTGGTCATGTTTTAGTAAAACTGAACTGAATGTAGTAAAGTGACACAAACATTTGGATACTTTGGTCTGTGTAGTAACTAAGTAGAAGTTGAAGGAAGCTGTATATACAATCTTAAACAATGGAaagcattttgtttattttcacatATACAGTGGGGGGAAATAAGTTTTGAGCATGTCATGTATTTTCCTGGGAAAgtattctaaaggagctgttgacagaattaaaccagattttggtaaaaacccaaacaatacaaacataacaatgtaacaaaacaatctgaaaaaaatatgtttaattgcaATGAAATGACACACAATATTGATCtactgaaatttatttaatactttatattaaaagCTTTTTTGGTAATGGCAGCTTTTAGACATcactcatatggagaatgaagtcacatgcattgctcggtgtgcttttttcacagacttcaacagagtgtaaaaatcttgatggttctgtaggTCTCGTCTATCTGATCTGATCTTTAATTGCTATTTttaattggattcaagtcaggtgattggctgggccattctacagcttgattttctttttctgaaagcatttgagagtttccttggctgtgttttggaccaTTGTCGTGCTGAagtgtccactctggtttcatcttggtaatgtagatgttggactgaagcagctgatattaaatTACAATGAGATAGAGCAGAGCGATTGAAGAACtgaagagatttcagctgctgtctgggctttcactctcttcatgtgttcaatacttttttcctgtgtcatttcattttattacacatatataatttgtaaattaataaaaaatagttttcttTGCATAGATGGATTTCTTTGATTGTTACTGACATCTGGAAAAAaattcaagtcaacggcacctttagaaatatgttttctgagaaaataaTTAGATGTTGAATACTTATATCCCGCACTGTAGATGTGCTGTGTAAAATGTCTTCATTTGCTTGCAAAAATTGTCGCTTTGCTTCTCAGTGTGTTATTGTATTATAATTGTGTTTGGAAAAATAATTTGACTGTTCCTCTGTGTACTTGCTATTAGCACTAGAATAAACTGTCACTTCTTTCTG
>TCONS_00016824
ACTTACAGAGATCTCTCTGCTTCTCTCGGGATTTCTTCCCTAAAAAGCTTCTGTTAATTTGACAGCCTTCCAAAAAACGACGCACCCGGAAATGAGTGCGTAACGCGGGCCTGGCGAGAAGTGCTCCGTTTCTGGTTTTCGGGCAGCAGTTCAGCACAACAACGACTGCGAGAGCGCGTGAAGGAGCCGAAGAGACTTTGGTTTCTCAATTTGTCTTGCAATGAAAGACATGAACATTCCGAACGGCAAAGCGGCTAATGGAGACCTGGAGCTAGGTGAGTGACGTCGTTGTGAGATGACCTTGTTGTCCACTTTCTCCAAATATAATTTCTGTATTTCTCAGGCAACGATAATGCTTTTGatcttattgttatttttttgtgttacact
>TCONS_00016826
ATGAAAGACATGAACATTCCGAACGGCAAAGCGGCTAATGGAGACCTGGAGCTAGACTTAATAAATGAGTATCTATTGGAGAAGACAAACAAGGAGTTGACAATAACGCTGCCTGgtcctcctcctccacctgtgGATCAGGACATCCAGGCAGTTAATCCACCGCCCAGGAACAGGCGAACCACCAACAATCCAGTGCTGGTATCTAGAGGAACAGCTCCACAGAATTCACTCAGCTTTGACCAGGTCCCCACTGCGCACGCTGATGGTATGGCAGCGATGCAATCCATTCGAGGTGCTAAAGGGTCATCTCAGCGACGGGGACTGGCATCTGTAGCAACCCAGCGTCGTATTCCTCAGCAGACAGGTACAGAACATCTGGAGATGTTTCTGGAAAAGCCAGACCTGGTGGTGGTGGAGCAGCCCAAGGAGCGCGGCATGCGTTTCCGCTATGAGTGTGAGGGGCGTTCAGCAGGCAGCATCCTTGGAGCCTCCAGCACAGACTCTAACAAGACCTTGCCTGCCATTGAAatccaaGGGCCTATTGACAATATCAAGAAAGTCATGGTCACGGTGTCTCTTGTGACAAAGGACATCCCATACCGTCCACACCCCCACTGCTTGGTCGGGAAAGACTGTACAGATGGCATTTGTGTCATACACATTAATCCTCACAGTAATCGTCGTCACAGTTTTGCAAATCTTGGCATCCAGTGTGTGCGGAGGAAAGAACTAGATGCCTCACTTCAGAAGAGGAGGAATAAAAATATCGACCCTTTTAACACGGGGCACAGTAAGAGCATAGAAGACATGGACATGAACGTGGTCAGACTGTGTTTTCAGTGTGAGCTGGAACAAAAGAACGGAGATAGGATCACTCTCAATCCTGTGGTTTCCAACCCCATTTACGACAAGAGTAAGAGCAAGATCTATACATTGATCCAAAAAGTCCAGAATGCAATAATCTCTGAAGTTTCTCAGCtgataacatttgtttttgtcttattagaGGCAACCACTACTGCAGAGCTGAAAATCAATCGGCTTAATGTGATTAGAGGACCCTGCACGGGAAAGACAGAGATTTACATGCTCTGTGACAAAGTGCAAAAAGGTAACCTGACTTTAGGCCACAGTTATGTCCTGAATTCCTATCATTTGCTGTGTTTTTAA
>TCONS_00016825
ATGAAAGACATGAACATTCCGAACGGCAAAGCGGCTAATGGAGACCTGGAGCTAGACTTAATAAATGAGTATCTATTGGAGAAGACAAACAAGGAGTTGACAATAACGCTGCCTGgtcctcctcctccacctgtgGATCAGGACATCCAGGCAGTTAATCCACCGCCCAGGAACAGGCGAACCACCAACAATCCAGTGCTGGTATCTAGAGGAACAGCTCCACAGAATTCACTCAGCTTTGACCAGGTCCCCACTGCGCACGCTGATGGTATGGCAGCGATGCAATCCATTCGAGGTGCTAAAGGGTCATCTCAGCGACGGGGACTGGCATCTGTAGCAACCCAGCGTCGTATTCCTCAGCAGACAGGTACAGAACATCTGGAGATGTTTCTGGAAAAGCCAGACCTGGTGGTGGTGGAGCAGCCCAAGGAGCGCGGCATGCGTTTCCGCTATGAGTGTGAGGGGCGTTCAGCAGGCAGCATCCTTGGAGCCTCCAGCACAGACTCTAACAAGACCTTGCCTGCCATTGAAatccaaGGGCCTATTGACAATATCAAGAAAGTCATGGTCACGGTGTCTCTTGTGACAAAGGACATCCCATACCGTCCACACCCCCACTGCTTGGTCGGGAAAGACTGTACAGATGGCATTTGTGTCATACACATTAATCCTCACAGTAATCGTCGTCACAGTTTTGCAAATCTTGGCATCCAGTGTGTGCGGAGGAAAGAACTAGATGCCTCACTTCAGAAGAGGAGGAATAAAAATATCGACCCTTTTAACACGGGGCACAGTAAGAGCATAGAAGACATGGACATGAACGTGGTCAGACTGTGTTTTCAGTGTGAGCTGGAACAAAAGAACGGAGATAGGATCACTCTCAATCCTGTGGTTTCCAACCCCATTTACGACAAGAaGGCAACCACTACTGCAGAGCTGAAAATCAATCGGCTTAATGTGATTAGAGGACCCTGCACGGGAAAGACAGAGATTTACATGCTCTGTGACAAAGTGCAAAAAGGTAACCTGACTTTAGGCCACAGTTATGTCCTGAATTCCTATCATTTGCTGTGTTTTTAA

Function

symbol description
relb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including innate immune response; intracellular signal transduction; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in breast cancer and immunodeficiency 53. Orthologous to human RELB (RELB proto-oncogene, NF-kB subunit).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0038061 NIK/NF-kappaB signaling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006954 inflammatory response biological_process
GO:0007249 I-kappaB kinase/NF-kappaB signaling biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0033554 cellular response to stress biological_process
GO:0034097 response to cytokine biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04064 NF-kappa B signaling pathway
ko04625 C-type lectin receptor signaling pathway
ko04380 Osteoclast differentiation
ko05166 Human T-cell leukemia virus 1 infection
ko05169 Epstein-Barr virus infection
ko03000 Transcription factors
ko02048 Prokaryotic defense system

ZFIN:

id description
ZDB-GENE-030131-9531 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including innate immune response; intracellular signal transduction; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in breast cancer and immunodeficiency 53. Orthologous to human RELB (RELB proto-oncogene, NF-kB subunit).

Ensembl:

ensembl_id ENSDARG00000086173

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016823 False 4414 mRNA 0.41 11 17100412 17125217
TCONS_00016824 False 390 processed_transcript 0.45 2 17100477 17101668
TCONS_00016826 False 1173 mRNA 0.47 7 17100697 17118012
TCONS_00016825 True 1080 mRNA 0.49 8 17100697 17118012

Neighbor

gene id symbol gene type direction distance location
XLOC_008405 clptm1 coding upstream 4757 17074185 ~ 17095655 (+)
XLOC_008404 plin2 coding upstream 51590 17030473 ~ 17048822 (+)
XLOC_008403 BX571762.2 coding upstream 179425 16914731 ~ 16920987 (+)
XLOC_008402 ypel2b coding upstream 185767 16897554 ~ 16914645 (+)
XLOC_008401 gdpd1 coding upstream 205537 16886196 ~ 16894875 (+)
XLOC_008407 si:ch73-223p23.2 coding downstream 125974 17251191 ~ 17255307 (+)
XLOC_008408 dhx40 coding downstream 133029 17258246 ~ 17285188 (+)
XLOC_008409 cltcb coding downstream 160772 17285989 ~ 17340198 (+)
XLOC_008410 vmp1 coding downstream 218102 17343319 ~ 17373352 (+)
XLOC_008411 dre-mir-21-2 coding downstream 248572 17373789 ~ 17373915 (+)
XLOC_008463 BX663520.1 misc downstream 4126974 21252191 ~ 21252282 (+)
XLOC_008400 BX649487.2 non-coding upstream 270536 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 581329 16518967 ~ 16519083 (+)
XLOC_008394 BX511308.1 non-coding upstream 1054908 16035869 ~ 16045504 (+)
XLOC_008393 NA non-coding upstream 1081623 15987054 ~ 16018789 (+)
XLOC_008412 CR848791.3 non-coding downstream 251150 17376367 ~ 17378063 (+)
XLOC_008419 NA non-coding downstream 760981 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 non-coding downstream 961485 18086702 ~ 18086816 (+)
XLOC_008422 NA non-coding downstream 1260373 18385590 ~ 18401208 (+)

Expression


Co-expression Network