G127855


Basic Information

Item Value
gene id G127855
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2953598 ~ 2953884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU145258
CCATGGTGTAGCATCTCCTCTTCTTTTCAAAACAGTTTGAAGATGTCTGGGCATCAAGGTTATGAGTTTCTGGAGTTTTGGTGTTGGAATTTGGTCCCATTCTTGCCTGATATAGGTTTCCAGCTGCTGAAGAGTTCGTGGTCATCTTTGATGTATTTTTCGTTTAATGATGCGCTTAATGTTCTCTATAGGTGAACTGCAGGCAGGCCAATTCAGCACCCGGACTCTTCTACGACGAAGCCATGCTGTTGTAATAGCTGCAGTATGTGGTTTTGCATTGTCCTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU145258 True 287 lncRNA 0.44 1 2953598 2953884

Neighbor

gene id symbol gene type direction distance location
CI01000026_02947832_02950047 RPS13, RPS13.L, RS13 coding upstream 3531 2947689 ~ 2950067 (+)
CI01000026_02928011_02935998 NA coding upstream 17292 2928011 ~ 2936306 (+)
CI01000026_02795613_02801257 TSPAN18, TSPAN18A, TSPAN18B coding upstream 151782 2795440 ~ 2801816 (+)
CI01000026_02722558_02725907 NA coding upstream 227293 2722558 ~ 2726305 (+)
CI01000026_02692703_02703519 TP53I11, TP53I11A coding upstream 249857 2692703 ~ 2703741 (+)
CI01000026_02976981_02977701 NA coding downstream 22557 2976441 ~ 2979013 (+)
CI01000026_03037832_03085312 NA coding downstream 83948 3037832 ~ 3085526 (+)
CI01000026_03163505_03268602 SOX6 coding downstream 209621 3163505 ~ 3268602 (+)
CI01000026_03279718_03281541 NA coding downstream 324974 3278858 ~ 3282416 (+)
CI01000026_03429002_03432390 CYP2R1 coding downstream 475118 3429002 ~ 3433060 (+)
G127841 NA non-coding upstream 40085 2913285 ~ 2913513 (+)
G127838 NA non-coding upstream 43456 2909924 ~ 2910142 (+)
G127826 NA non-coding upstream 69519 2883873 ~ 2884079 (+)
G127728 NA non-coding upstream 211138 2742089 ~ 2742460 (+)
G127725 NA non-coding upstream 217200 2735979 ~ 2736398 (+)
G127856 NA non-coding downstream 4450 2958334 ~ 2958590 (+)
G127815 NA non-coding downstream 320391 3274275 ~ 3274647 (+)
G127899 NA non-coding downstream 365590 3319474 ~ 3319736 (+)
G127916 NA non-coding downstream 392085 3345969 ~ 3346183 (+)
CI01000026_02659356_02660297 NA other upstream 292769 2658605 ~ 2660829 (+)
G127519 NA other upstream 526592 2393683 ~ 2427006 (+)
G127531 NA other upstream 641463 2309322 ~ 2312135 (+)
G127500 NA other upstream 1007159 1931183 ~ 1946439 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 2175801 776757 ~ 777830 (+)
G127979 NA other downstream 798667 3752551 ~ 3762986 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other downstream 1333989 4327206 ~ 4332085 (+)
G128137 NA other downstream 1476678 4430562 ~ 4431201 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other downstream 1601892 4555776 ~ 4557613 (+)
G128585 NA other downstream 2995929 5949813 ~ 5950122 (+)

Expression


Co-expression Network