G132556


Basic Information

Item Value
gene id G132556
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 9352212 ~ 9353181 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU150742
TTATTTGCTTTTAACGGATTAAAAAAAAAAAAAAAAAATACTCGCACAGCTGAGCTAACATCAGTATTCTTACTGAAACTGCCCAAAATAGACAATAAAAAAAGCATTGTAAAACAAAAACAAAATCTAAAATTTCAACCATTGTAATTTTCTAGATAAATAAATGAGAGCTATGGACTCTGTTATAGAGGCCATTCATTTAATTGAACTTCTCCACTATTTACACATCAAACCCATGTAGATCAAACCATTAGGACAGAATAATACGGATTAACTGTCTTAATGTATAGTATTTGTCCTGCTCTGTATTTTACATTAAAACCATTTCATACACAGGATATTACATACACACAAAAAAAAAAACCTCAACCAAAATACATCAAGGCGCAAAAATGCATGTCCCAGTCTGCTAAATTATGTTTGACATTAAAACTATTAACCAAGTTTGTAGGGAAAGGAAAACCAAAGGAAAATGTATCAAATCTATCAAATTATTTGTTAGAAAATCAAGTTTGTCATTTAGAAGAGCATGACCTACACAAATACGTGAGGTGGTTTGTTGTGCCTGAAAACATGTGCAAGTAACATTATTGACTAGAACTATCTCGGTGCCGTCTGTGCGTTCAAGTCTCAGCAATGAAATGAACGAGTGGGGTCTTTAGATCTATACCGGGAACATGTCTATAGTTCTGAAGCTATTATAGCAGTTTAAAATGATTTTCTTTTAAAGCTGAGCAAGGGTTTTGCGAATGAAGATGAAGTTCATAGAACTGCATCAGAATTCTATACATGTGGTTCGGCGCTGCCACAGTAGCATAGCGCCCCTCCTGGTGGACAGACAGAAGCACTGAAGGTTCACGTCTGAAGTGGGTTGTCCTCTTTGCTGAAAGGCTGAGTGGAACCAGGCTTCACCCAAGACAGCCCAGACACCGGCAGTCCTTTGTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU150742 True 947 lncRNA 0.36 2 9352212 9353181

Neighbor

gene id symbol gene type direction distance location
CI01000026_09233035_09245301 FTO coding downstream 106651 9232857 ~ 9245561 (-)
CI01000026_09203430_09218432 FTO coding downstream 133780 9203430 ~ 9218432 (-)
CI01000026_09147356_09156946 NA coding downstream 193686 9147328 ~ 9158526 (-)
CI01000026_08861639_08866198 IRX5A, IRX5 coding downstream 484063 8861639 ~ 8868149 (-)
CI01000026_08722735_08726049 IRX6A, IRX6 coding downstream 626018 8722139 ~ 8726194 (-)
CI01000026_09470361_09503958 NA coding upstream 117116 9470297 ~ 9504385 (-)
CI01000026_09911514_09913512 NA coding upstream 557700 9910881 ~ 9913651 (-)
CI01000026_09946977_09948009 NA coding upstream 593749 9946930 ~ 9948167 (-)
CI01000026_09991433_10006016 CYLDA, CYLD coding upstream 638134 9991315 ~ 10006016 (-)
CI01000026_10014914_10019772 NOD2 coding upstream 660394 10013575 ~ 10020199 (-)
G132539 NA non-coding downstream 53339 9298663 ~ 9298873 (-)
G132498 NA non-coding downstream 149820 9198442 ~ 9202392 (-)
G132465 NA non-coding downstream 248609 9103193 ~ 9103603 (-)
G132523 NA non-coding downstream 260388 9091609 ~ 9091824 (-)
G132197 NA non-coding downstream 401696 8950284 ~ 8950516 (-)
G132581 NA non-coding upstream 17403 9370584 ~ 9372605 (-)
G132580 NA non-coding upstream 57632 9410813 ~ 9413756 (-)
G132606 NA non-coding upstream 81816 9434997 ~ 9435342 (-)
G132615 NA non-coding upstream 114783 9467964 ~ 9468258 (-)
G131742 NA other downstream 1044505 8306776 ~ 8307707 (-)
G130256 NA other downstream 3035058 6275511 ~ 6317154 (-)
G129750 NA other downstream 4532930 4785885 ~ 4820249 (-)
G129658 NA other downstream 4979143 4367296 ~ 4373069 (-)
G129476 NA other downstream 5681328 3670574 ~ 3670884 (-)
G132575 NA other upstream 33970 9387151 ~ 9387716 (-)
G132721 NA other upstream 196849 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 995012 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 1434158 10787339 ~ 10789709 (-)
G133790 NA other upstream 1480834 10834015 ~ 10859589 (-)

Expression


Co-expression Network