G133730


Basic Information

Item Value
gene id G133730
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10456825 ~ 10457973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU152047
ATTAATAACAACAAATAGCAACAAACTCTGTACAACAAACAACTTTTATTATTGCCAACACAATTCACTTTAAGATATTCTTGTAGATTTTAACTCTGGAGTGAAAGTAAATAAAATCTCAGCCAACCATGACACTCACTTAAGATGCATTTGCCTGTTACCCTTTTATGTTAAACTAGTGCAGCCTTTGGTCGCATAAAAGTTCTTTAAAAACAACAAAAAGCAGCGCATCATCATGCCATAGGCATAAACATTTCATAAATGTTTCCTACATGTAAAAGTCAGCTTAAGGTGAACAAATATCTACACTTTAATATTTATTATGTGTTCAGCAATTTACTTAAAAATACATACACCGTATGCATCTAAAATAAGACCACAGTATTACAGATGAGGATATCAAAACCCACAATCAAATAAAACTCAAATTTTCCAAAAGAAAAATAAGGATGTTATTTAAAAATAGCAGAAACCATTTTTTTTCTTCAAAATGTTTCCTTTTGAGCTCCCATTGCTTCTTCATATGTTGCAAAGGGAAGTTAGAGTCCTATTTGGGAAGTGGATCCCCACACACTTTGGATAATCTCCTCCTGGCACTGAGGCCGATGTGCAATCTTTAATTAATGTTGATATGAAATACTCTCCACTCCCATCTCTTCAAGGTGCTATTGGATATGAGGCCGTGGTTTCAGGATAAGTTTCCCCGTCTAGCATAAGAGGAGGAAAAATACAAATGAATGCACAAGAAAAATGTTTTTGAATTCTTAAATCAGTGAAACTGAGAGATCATAAAGGGCAATAATTCAAAGGACACAAGTACTTACATCATCACAGGACATGTTATATTCTGCTAGTACTGTTCGGCAGCGTGCTGCAATACTGCAACAAGAAGTTAAGGAGAGATCCAGTAGTCACTGACAATCTGCAGTCTTGGAATGGTTAATACTCAATAGAATGGCTGAGCACAAAGAACACCACTGCAAATTTCCAGCATTGAGAAGGATACATAGATGGCGCCACGACTCGTTTGTGTATTCCAGCAAAGAAAAGGCCAATAAGT
>TU152046
TGTAAAATAATTTCCAACTCAGATTTTGAATAACTAATAAGCAGTCTCAACTGACAGATGCATGTTAACTAGTTCTCAGTTTCAGTGACATTAATAACAACAAATAGCAACAAACTCTGTACAACAAACAACTTTTATTATTGCCAACACAATTCACTTTAAGATATTCTTGTAGATTTTAACTCTGGAGTGAAAGTAAATAAAATCTCAGCCAACCATGACACTCACTTAAGATGCATTTGCCTGTTACCCTTTTATGTTAAACTAGTGCAGCCTTTGGTCGCATAAAAGTTCTTTAAAAACAACAAAAAGCAGCGCATCATCATGCCATAGGCATAAACATTTCATAAATGTTTCCTACATGTAAAAGTCAGCTTAAGGTGAACAAATATCTACACTTTAATATTTATTATGTGTTCAGCAATTTACTTAAAAATACATACACCGTATGCATCTAAAATAAGACCACAGTATTACAGATGAGGATATCAAAACCCACAATCAAATAAAACTCAAATTTTCCAAAAGAAAAATAAGGATGTTATTTAAAAATAGCAGAAACCATTTTTTTTCTTCAAAATGTTTCCTTTTGAGCTCCCATTGCTTCTTCATATGTTGCAAAGGGAAGTTAGAGTCCTATTTGGGAAGTGGATCCCCACACACTTTGGATAATCTCCTCCTGGCACTGAGGCCGATGTGCAATCTTTAATTAATGTTGATATGAAATACTCTCCACTCCCATCTCTTCAAGGTGCTATTGGATATGAGGCCGTGGTTTCAGGATAAGTTTCC
>TU152048
ATTAATAACAACAAATAGCAACAAACTCTGTACAACAAACAACTTTTATTATTGCCAACACAATTCACTTTAAGATATTCTTGTAGATTTTAACTCTGGAGTGAAAGTAAATAAAATCTCAGCCAACCATGACACTCACTTAAGATGCATTTGCCTGTTACCCTTTTATGTTAAACTAGTGCAGCCTTTGGTCGCATAAAAGTTCTTTAAAAACAACAAAAAGCAGCGCATCATCATGCCATAGGCATAAACATTTCATAAATGTTTCCTACATGTAAAAGTCAGCTTAAGGTGAACAAATATCTACACTTTAATATTTATTATGTGTTCAGCAATTTACTTAAAAATACATACACCGTATGCATCTAAAATAAGACCACAGTATTACAGATGAGGATATCAAAACCCACAATCAAATAAAACTCAAATTTTCCAAAAGAAAAATAAGGATGTTATTTAAAAATAGCAGAAACCATTTTTTTTCTTCAAAATGTTTCCTTTTGAGCTCCCATTGCTTCTTCATATGTTGCAAAGGGAAGTTAGAGTCCTATTTGGGAAGTGGATCCCCACACACTTTGGATAATCTCCTCCTGGCACTGAGGCCGATGTGCAATCTTTAATTAATGTTGATATGAAATACTCTCCACTCCCATCTCTTCAAGGTGCTATTGGATATGAGGCCGTGGTTTCAGGATAAGTTTCC
>TU152049
ACAGATGCATGTTAACTAGTTCTCAGTTTCAGTGACATTAATAACAACAAATAGCAACAAACTCTGTACAACAAACAACTTTTATTATTGCCAACACAATTCACTTTAAGATATTCTTGTAGATTTTAACTCTGGAGTGAAAGTAAATAAAATCTCAGCCAACCATGACACTCACTTAAGATGCATTTGCCTGTTACCCTTTTATGTTAAACTAGTGCAGCCTTTGGTCGCATAAAAGTTCTTTAAAAACAACAAAAAGCAGCGCATCATCATGCCATAGGCATAAACATTTCATAAATGTTTCCTACATGTAAAAGTCAGCTTAAGGTGAACAAATATCTACACTTTAATATTTATTATGTGTTCAGCAATTTACTTAAAAATACATACACCGTATGCATCTAAAATAAGACCACAGTATTACAGATGAGGATATCAAAACCCACAATCAAATAAAACTCAAATTTTCCAAAAGAAAAATAAGGATGTTATTTAAAAATAGCAGAAACCATTTTTTTTCTTCAAAATGTTTCCTTTTGAGCTCCCATTGCTTCTTCATATGTTGCAAAGGGAAGTTAGAGTCCTATTTGGGAAGTGGATCCCCACACACTTTGGATAATCTCCTCCTGGCACTGAGGCCGATGTGCAATCTTTAATTAATGTTGATATGAAATACTCTCCACTCCCATCTCTTCAAGGTGCTATTGGATATGAGGCCGTGGTTTCAGGATAAGTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152047 False 1060 lncRNA 0.36 1 10456825 10457884
TU152046 False 792 lncRNA 0.34 1 10457182 10457973
TU152048 False 703 lncRNA 0.34 1 10457182 10457884
TU152049 True 739 lncRNA 0.34 1 10457182 10457920

Neighbor

gene id symbol gene type direction distance location
CI01000026_10421310_10440151 ABCC12 coding downstream 15898 10420159 ~ 10440927 (-)
CI01000026_10347872_10351783 CEBPA coding downstream 105042 10347746 ~ 10351783 (-)
CI01000026_10234932_10250720 HEATR3 coding downstream 206105 10234932 ~ 10250720 (-)
CI01000026_10205804_10233324 PAPD5 coding downstream 222388 10205433 ~ 10234437 (-)
CI01000026_10151857_10176733 ADCY7 coding downstream 280092 10150667 ~ 10176733 (-)
CI01000026_10487830_10511296 SLC7A10A, SLC7A10 coding upstream 27842 10485815 ~ 10512739 (-)
CI01000026_10599580_10600367 NA coding upstream 141230 10599203 ~ 10600367 (-)
CI01000026_10658906_10667378 CELF1 coding upstream 200601 10658574 ~ 10667753 (-)
CI01000026_10695298_10696443 C1QTNF4 coding upstream 236822 10694795 ~ 10696652 (-)
CI01000026_10713071_10715415 NA coding upstream 254253 10712226 ~ 10715727 (-)
G133733 NA non-coding downstream 1244 10455173 ~ 10455581 (-)
G133758 NA non-coding downstream 6054 10450572 ~ 10450771 (-)
G133757 NA non-coding downstream 7199 10449402 ~ 10449626 (-)
G133724 NA non-coding downstream 78010 10378564 ~ 10378815 (-)
G133723 NA non-coding downstream 78391 10378220 ~ 10378434 (-)
G133760 NA non-coding upstream 6965 10464938 ~ 10465901 (-)
G133764 NA non-coding upstream 9837 10467810 ~ 10475748 (-)
G133741 NA non-coding upstream 89382 10547355 ~ 10547604 (-)
G133785 NA non-coding upstream 93694 10551667 ~ 10627032 (-)
G133786 NA non-coding upstream 94960 10552933 ~ 10628051 (-)
G132721 NA other downstream 906181 9550030 ~ 9550644 (-)
G132575 NA other downstream 1069109 9387151 ~ 9387716 (-)
G131742 NA other downstream 2149118 8306776 ~ 8307707 (-)
G130256 NA other downstream 4139671 6275511 ~ 6317154 (-)
CI01000026_10788054_10788652 CD59 other upstream 329366 10787339 ~ 10789709 (-)
G133790 NA other upstream 376042 10834015 ~ 10859589 (-)
G133802 NA other upstream 843942 11301915 ~ 11307181 (-)
G136110 NA other upstream 4096944 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 6298756 16756729 ~ 16761341 (-)

Expression


Co-expression Network