CI01000027_01466387_01475758 (OTUD7B)


Basic Information

Item Value
gene id CI01000027_01466387_01475758
gene name OTUD7B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1465547 ~ 1475758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01466387_01475758.mRNA
ATGACTTTGGATATGGACGCAGTCCTGTCCGACTTTGTCCGTTCTACTGGAGCTGAACCAGGACTGGCCAGAGACCTGCTGGAGGGAAAGAATTGGGACCTCTCAGCTGCGCTGAGTGACTTTGAGCAGCTGAGACAAGTGCACGCTGGGAATCTCTCATGCACCCTTGCTGAGGAGAGAGAGTACCCCTCCATTGAGAAGGAGATGGCACGAACGGGGCGGTCCCTTTTGTATCGCCAAGATGAGGTTGTGCAAGCAGCCACGGAGAAGCGACTGTCGAGGGGGATCTCTCACGCCAGCTCCACCATCGTCTCTCTGGCCCGCTCACATGTGTCCAGTACGGGAGGCAGCAACGAGCCGCTTCTGGACACTCCTCTCTGCACCTTCCAGTTGCCTGACCTCACCGTCTACAGAGACGACTTCCGCGGCTTCATCGAGAGAGACCTCATTGAGCAGTCTATGATGGTGGCGTTGGAGCATGCGGGACGATTGAATTGGTGGACTCGTTTGGGCACTGGCTGTCAGAGTTTATTACCTCTGGCTACTAGTGGTGATGGGAATTGCCTGTTACACGCAGCCTCACTGGGTATGTGGGGCTTCCATGATCGAGACTTGATGCTGCGGAAGTCTCTCTATGCACTGATGGATCATGGGCAGGAGAGGGAAGCTTTAAAGCGAAGGTGGAGATGGCAACAAACCATGCAGAACAAAGAGTCGGGACTGGTTTACACAGAGGAGGAGTGGCAGAGAGAGTGGAATGAGTTGTTGAAACTGGCATCTAGTGAACCCAGGATACACTACAGCACCAACGGCAGCAACGGTGCCGAGTCACAGGAGGAGCCGGTATATGAGAGCCTGGAGGAGTTTCATGTGTTCGTTCTTGCTCACGTGCTCCGCAGGCCGATAGTGGTGGTGGCTGACACCATGCTGCGGGACTCTGGGGGAGAAGCTTTCGCACCAATCCCATTTGGAGGGATTTACCTGCCTCTGGAAGTACCAGCCAACAAGTGTCACCGCTCTCCTCTCGTTTTGGCGTATGACCAGGCCCATTTTTCTGCTTTGGTCTCAATGGAGCAGAAGGACAGTTCCAAAGAACAAGTGGTGATCCCTCTGACAGACTCGGATCATAAGATGCTGCCTTTGCACTTTGCTGTGGATCCTGGGGAAGACTGGGAATGGGGCAAAGATGACAATGACAATGTGATGCTAGCAAGTGTAACCTTATCTCTGGAGGCCAAGCTCCATCTGCTACACAGCTACATGACTGTCACCTGGCTTCCTCTACCCTGTGAAGTACAGGCCCCATTGGCCCAGCCAGAGTCACCTACAGCGTCTGCAGGAGAGGATGCCCGCACCCCTCAAGACTCCGGAGAGTCAGATAAGGAGTCCGTCAGCAGCAGTTCCAACGGCAATGGGGACAGCAGTACTACTGGAACCAGTGGGACAACAGGCAAAACAAGTGGTGGATCTTCCAGCTCCTCTAGCTCATCCAGTAACAGTTCAGCAGGGACAACTGGCACAATTGGAAAGGAGAAGGGGAAGAAAGACAAAGAAAAGGATAAGGACAAGAAACGTGCAGATTCCGTTGCCAACAAGCTAGGTAGCTTTGGGAAGAGCCTGGGCAGTAAGCTGAAGAAGAATGTGGGAGGCCTGATGACGGGGAAGAACGCAAGTGGAAGTGGAGGCAAACAAGAGGGTCAGGAGAAGAAGAAAGGCTCTCTGAGAGGTCGTAAGGGCAGTAAGGACAGCTCTCCCTCCATTCAAACCGGCTCCGAGGACTCTGGGAAAGGTTCACCCTCCTCAATAAGCGAACGGCAAAATGGAAGCTACTCTTCGGAAAGTGACCCTTTTAAGTACAGCTCGGATGTGAAAGTTAGTCTTAGCATCCTTCGATCCGCTATGCAAGGTGAACGGAAGTACATCTTTGCTGCGCTGCTCACTACCAGCAACCGTCAGCCGTTCCAAGAGGAGATGATCCAACGCTACCTGATGGATGCCGAGGAGCGCTTCCATGCCGAACAGGAACAGAGGAGGGAAGCTGAACGGAAAGCAGCAGGAGGTCTTATAACTACTAGTGGATCCCAACTGAAAAAGGATGGGCCTGAGCTGAGTTATAGAGGTTTTGAAAGCAAAGAGGAAATTACTGATAACTCACCTCCTACTTTTAACGCATTGAAGTCGACTTCTTTCAGCCCGGTGATGTACTCGGGTGTGGTTCCAATCCCAAGGCCCACCTTCATTGATCATTCTCCTACCCCAATTGCACAGCATCTTCATATGCATGGTTACATAGATACACGGCGGCAGCTGGCAGGAGGTTCTCCATCTTCTTACCCAGGCCTACCATCCTATGCCACCTTGCCCCGACACTGCCCCCTAGCACAGGGCCCGCCCCATTCCCAGTACCACCCGCCTTCCACCAGCTTGGGCAGCCCATCCCGTATCATCACCCCCTGCCTGGCGTCTTTTTCCCAAGAGCATGACCCAACTGACTACCCAACCGAACCTACCGGAGGCTACACAAATGGCTTGCGGGACTTGCGCTCGACTTTGGACAGTCGAAATGGGCCGATGCCTGTGAGGCATTACTCCTTGGGCAGTGCGGGTGGCCTTGCAAACCTGCAGTCCAGCAAATGCCGAACGCCTACCTGCAATTACTACGGCCACCCTGAGACGGGCAATTACTGCTCGTACTGTTACAGAGAGGAGCTGAAGAGACGGGAAACAGAGCCGGCCATCCACAGGTTTTGAATGGACAAATCTCTGTTCTGTTTCTCTCCTATAGGACTCATTGGAGCCCGACGTGTGAGCCACATCATATCCTGTTTGCGTGGATCTTGCTTTAAGACATAAGATCGGCCTTTCTGAACCAGGTTACTGAGACTCTGTGTCCACAATTAATGGGCATTGTGGAAATGGGACTGCTGTTGTGTTACATTTGCTGTGGCTCATAGGCAGGAGCTTTAAGCTCCTCCCACATTTGCTTGATGTGGTCATCCTCTTATCTGTCTCCTTGTCTCCTCCTAGTGGCGAGAATGTAGAACACAGGCAATAGACATTGGAACACAACATGCTATGTTGCATCACATGGACATGCCGCGTACCCCAAAATACACATTAAGCACAACCAGAAAATGCGTATTTATATTAGCTACAGTTAATCAAGTTATATCAGATGCAATCAAAATAAGACTTGCCATATGGCAACAACACTCTGTTAGCTTCGAGTGTTATACACATTGGCCCATTTTACTGTAACGCTACATTACTTTACTTTAACTAGCACCCCTTTTAAAGCCATACCTAGTTGGCTTAAATTAGCTAATATGGTGCTTTCTCGATTCTAAGATGTTTAACTTATGGAGCTGAACCTTGACAGACAAAGGGTTCGTTTTAGGTCTTTACACATCCTCATTAAAAATTGCAGTAATTTACGTTCTATTAAGTGTTTTTAGAACATTTAAAAGTGCAAAACCTTTAAAATTAGTGCAAAAAAAATTCCCTTTCTCAAGGAAAGAAATTAGACATCATTTTTTAGAAATGGTACATCATGTGGTAGTATTCAAGTATTATGTTGGTTATATTAATAAA

Function

symbol description
otud7b Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and thiol-dependent deubiquitinase. Acts upstream of or within Notch signaling pathway. Predicted to be active in cytoplasm and nucleus. Orthologous to human OTUD7B (OTU deubiquitinase 7B).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01466387_01475758.mRNA True 3591 mRNA 0.50 11 1465547 1475758

Neighbor

gene id symbol gene type direction distance location
CI01000027_01420180_01439837 MTMR11 coding downstream 25710 1420122 ~ 1439837 (-)
CI01000027_01361532_01381534 SV2A coding downstream 82781 1361288 ~ 1382766 (-)
CI01000027_01354194_01354663 BOLA1 coding downstream 110884 1354042 ~ 1354663 (-)
CI01000027_01327656_01344105 NA coding downstream 120699 1327626 ~ 1344848 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 coding downstream 144369 1302034 ~ 1321178 (-)
CI01000027_01499088_01500312 RBM8A coding upstream 23282 1499040 ~ 1502028 (-)
CI01000027_01587854_01598407 NA coding upstream 111980 1587738 ~ 1598446 (-)
CI01000027_01610574_01630928 SMG5 coding upstream 134683 1610441 ~ 1630928 (-)
CI01000027_01651455_01676579 SYNGAP1B coding upstream 175053 1650811 ~ 1676579 (-)
CI01000027_01775507_01793407 PHF1 coding upstream 299737 1775495 ~ 1793407 (-)
G139498 NA non-coding downstream 2235 1462993 ~ 1463312 (-)
G139457 NA non-coding downstream 2722 1461180 ~ 1462825 (-)
G139514 NA non-coding downstream 132009 1333312 ~ 1333538 (-)
G139443 NA non-coding downstream 140286 1324926 ~ 1325261 (-)
G139436 NA non-coding downstream 166760 1296520 ~ 1298787 (-)
G139487 NA non-coding upstream 75327 1551085 ~ 1557170 (-)
G139553 NA non-coding upstream 132620 1608378 ~ 1609068 (-)
G139567 NA non-coding upstream 367618 1843376 ~ 1843598 (-)
G139568 NA non-coding upstream 368246 1844004 ~ 1844342 (-)
G139569 NA non-coding upstream 369479 1845237 ~ 1845494 (-)
CI01000027_01241417_01245177 NA other downstream 218570 1240478 ~ 1246267 (-)
G139117 NA other downstream 1227968 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1331745 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1347244 108119 ~ 118408 (-)
CI01000027_02119227_02124423 NA other upstream 646372 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 750867 2225781 ~ 2227499 (-)
G140118 NA other upstream 2025776 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 2311620 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 2446638 3922242 ~ 3931033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010227 otud7b coding NC_007127.7 CM002900.2 45930962 ~ 45982657 (+)