CI01000027_06335278_06348176


Basic Information

Item Value
gene id CI01000027_06335278_06348176
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6335160 ~ 6348853 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_06335278_06348176.mRNA
CTATAAAATAAAGCAGTTGTCAGCTGGGGGGACACTTATTTTAAAATGTTTTCAGTTTTAAGATACTAGATACTAGGTCTGGTTTCATCTGCACTGTTCACATCTCAGTACTCACGTCATGGGTATAGCATTGATCTTACACCCTTGCCACAGACTGCTGGTGGAAGTTGCTGAGAAGACCAATGAAGACCTCACATGCACAGGTCCAGTAGCTGAATTCTTTTTCAGTGTCAAGTTTTACCCACCTGATCCCTCAATTCTGGCTGAGGACATCACTAGATATCTCCTGTGTCTTCAGCTGAGGAAAGATATTCTGATTGACCGACTGCCCTGTCCATCAGACATCTTGGCTCTGTTGGGTTCATACACAGTTCAGTCAACACTTGGTGATTACGACCCAAATCTCCACAAGAACAACTATGTCAGTAAAATTGTTCTTGCACCCAATCAGAGTGAAGAGCTGGAGGAGAGAGTGATGGAACTGCATTCCACATACAGATTTATGAGTCCTGCCCAGGCAGATATGCTTTTCCTTGAGAACGCCATGGGGCTCCCCATGTATGGAGTGGACCTGCATCCTGCCAAAGATGTCAGTGGTGCAGATGTGATGCTCGGTGTGTGCTCTGAGGGACTGATAGTTTATGAAGATGAGATAAAAACAAATGTTTTCCACTGGCCCAGAGTTAATAAAATCTCCCACAAACGCAGCACCTTTCTTCTCAAGATGCGTCCTTTTGAGGATGAGCCTGATGGTGTCATCAGCTTTAGTTTGGCCAACTACCGAGCCTGCAAACAACTGTGGAAATGCTCTGTGGAGCATCATAGTTTCTTCAGGAACAGACTTCAAGACACAAAGGCACAACGGCTCCTGACCTTGGGTTCAAGGTTCCGCTACCATGGACGCACTCAGTCTGAGTGTCTGGAGGCCAGTGGCAACATCACGCGAGCTCCTCCACGATTTACACAAAATGATGAAATTCTTGATATTCTAAAGCAACCAGTTCGATCTGAGTTTGACGACTGGTTCCTGGTCTATGGTCCAGACAAATGGCGCATTTCTACATTAGATGATGTGATGCTGGAAAGCCAAAAGCTGCAGGAGTGGAAGCGTCATGCAGATGATTGGTGTGTCCTCTTTGACGGCAGCCCATTTTCAGTATCAGGCATCCAGCAGCCTTTTCAAACTAAAGAACAGAGAGAGGACGTGGATGTCGTTGAGGGGTCAGATGAGAGGCTCACAGATGAGCTTGTGATAAAACAATCATATAAACTTCAGGTGGTCCAGGAGGGGTCTGATGTTATTGAGAAAGAGCATCCTGATTTTGAATTGAAACCTCTAAAGGAGACACTAAGAGAGGAAGTACTAGAAGTCAATGGAGAAAGAATACAGAGGGTAGTAATCACTAAACAATGGACACAGGAGGTCAACTCTTTGGTGGAATCACAAGTAGATGTAGAGAAAAAGGTAGAGAGCATGGAGATGGTAGAAAGACGTGTAATGGTCACTGAAGAGAAGAAATTGGTTTCTGGGGACACTTTTGAGAGACTGGAAATCATGGAACAGAGACTAGAGGAGGTGGAGGCTATCGAACGAAAGCTAGTTGAGGTGGAAGAACTGAGGGTTGGATTACAGGAAGTGGAAAGTTTGGAACAAAGGTTGCAGCAAGTTGAAAAGGAGGAGCTTCAACAGGCGGAGACAGATGATTGGTACATTTTACTAGATCGCAGGCCATTGATGCTCACTCCTAGTCCAACAGGAAGAGTTCAGGAAGAGTTGCAACAAAGTGTATATATCCCTAAACCATTGAAGAAAGATGATGATTGGTACATACTATTCGATGTGCTCCCACAAACGATGGAGATATCGCGTCCCCTTCCAGATGTGAGCAGCTCCATTCTTGAAGAATATCAGGCTGAAGAAGAGAAGAGAGAGGTAGAAAGGAAAATACAGCAAGAGCTGGTGCCACCGGAGAAGCCAAAAACACAGACTAGAGAGGAGGTGATTCAGAGCAGAGTGAAAACAGAGGAGGTACAGAATGAATATAAGGAGCAGGTGACAGTGGATTATGGGAGACCACAGACAGTTGTTCTTGAGCAGAGAGCAGCAGAGCCTCAAACAGATGAAGAGAACGACTGGTTTGTCGTTTTGGATGGTTTTCCTAAAAGATCAGTGCCTTCTGTTGAGCTGTATGAAGAGACCAGAGAGGATGTAATCCGGAGCATAGTGAGAACAGAGCAGATAAAACAACAGGAACAGGTGACAGTGGATTATGGGAGACCACAGACACTTATTCTGGAGCAGAGGACAGAACAACCTCAAAGAGACGTGAAGGATGATTGGTTCATCATTTTTGATATTTCTCCAAAAGGATCAGTGCCCTTGACTCCACATCTGCAAAGCCCAACTGTAGACCTGTATGAGGAGATCAGAGAGGTGATTCAGAGCAGAGTGAGAACTGAGGAGGTGCAGATAAAACAACCGGAGCAGGTGACACTGATAGATGGCAAACCACAGCAAGTTATTCTTGAGCAAAGAGCAGCACAACCTCAAAGAGACGTGAAGGACGACTGGTTCATCTTGTTTGATGTTTCTCCTGACGAATCAGAGACCTTGGTGTATCCACAGCTGCAAGGCACATCTGTTGAGCTTTATGAGGAGACCAAAGTGGAGGTGATTGAGAGCAGAGTGAGGACAGAGGAGAAAGTGACCGAGGTGATGACCGTAAGCACTAAAGAACAAATAATAGTACCAGAGAAGAAGAGGACAAGCATCATACAAATACCACAGTTTCCAGTGGTGCCCAGGGAAATTGATGACGACTGGTTTCAGCTTTTTGACAAAGTGCCTTATGAGCAGAAGAGTTTTCCATCAGAGACTCGCATTGTGTCTGTGGCTCCTTTGGAGGCTGAAGAAAAGAGAACTGTGGAGAGGAGAAAAGAGGAGGTGCAGATAAAACAAGAGGAGCAGGTGACAGTGAATTATAGAAGGCCAGAGCCACTTACTCTGGAACAGAAGGCAGCAGAGCCTGAAAGAGACATAGAGGACGACTGGTTCATCATTTTTGATGTTTCTCCTAAAGAATCAGTGCCCTCATCTCCACGGCTGCGAGGCACATCTGTTGGGCTTTATGAGGAGACCAGAGAGGAAGTGATTCAGAGCAGAGTGAGGACAGAGGAGAAAGTGACTGAGGTGATGACTGTGAGCACTAAAGAACAAATAATAGTACCAGAGAAGAAGAAAACAAGCATCATACAAACCCCACAGTTTCCAGTGGTGCCCAGAGAAGTTGATGACGACTGGTTTCCGTTTTTTGACAAAGTGCCTTATGAGCAGAAGAGTTTTCCATCAGATGTCAGTGGCATAGATTTTGAGGTCCGTGAACCCACCAAAGACCCGAGAGTTCAGACGGTGGTGGAGCAGCAGATGAGAGAGAGAAGACTGATCACGGAAGAAAAGAGAGTGGTCATTGATGAGCGCAGAAAGAGAGCTGACATTGTTCCGCAGAGGAATCCCACTGGGGTTCAGGAAGTTGATGATGACTGGTTTGAGCTTCTGGACACAACACCTTCTGAGAAGAGGAGCATCCCTTCAGGTGGAAGCAATAGCTGCATGTCTTATTCTCTAAGCTATCCTGGTATTGCTTCAGTGGTCACTGAAGAGCGCAGGATTAAAGAACAAGAGGACAGAGTGAGACAGCAGGAGATGAGAGTGAAAGAGGAGGAGAAGACGAGACTAAGAGAACAAGAGAAGCGAAAACTGGAGCTGGAAGTCAGAAGAGCTCAACCATCTATTACTCTGGCAACAGAAGTACAGCCTCAGATTGAAGCAGAAGACGACTGGAGGGCTGAGGAAGAGAAGAGGAGAAGGGAAGAAGAGAGGAGGAAACAAATAAGAGTGGACGAAAGACCAAAAAGGCCATCTGTACCTGTGGAAAGACCAGTACAGTTGCAGACAGAAGTGGAGGATGATTGGTTTACACTTATGGGCATTTCCCGTAAAGATTATTTTCCCGCTCTTCCACGCACACCTGTTATTTCCCCAGTGGCTCCGCCCAAACCCCGCCCACAGATCCCAGCTGACCAACCACTGACATCCACTCCGACCGCACAACCTGTGTCCATTACAAAAACCCATCAGGAGAGGACAAAAGACACCCTGAACATTACACTGGAGTCTGAGGCTGAGACTGAGTCTGTGCTCATGAGGAGGTCACAGACATGGACAAAGAGAATTGAAGGAGAGAACATTTATGTTCGTCACAGCATTCTGATGCTGGAGGATTGTGATATATCCCAAGAGATGATATTGAAGCACAACGCCAGCATTAATGTACTTAAACGTGACTTTATGGAGGTCAAGCAAGATTTCGGACCCACTGAATGGGACAGACGTCTCTCGTCATACTCGCCTACTGGCAAAGCTCAGCTCCCCCATGCCAACGGCGAGATACTCGTCAGAATGGGCTTAATTGAAGATGATGAAAAAACAGTCTTGTTTCGCCAACAAGAAACAATATATCTTTGAATTCAAACTGCCTGAACATTTCATTTCTACGCACTTGCTGAATCACTTGCTTAATCATTGCTGAAACGTTCAAGGATGTGAATGTGTGGAAAAAGAAACGCTTCGCATGTTTTATAGAATATAATCCTCTTTTGACATTTTCATCAAATTGATCAGTGTAATTTAAAATTGTTGATAGTTAACTATGTACTACATCAAAAGACAGGCCAGTTTTGTAAAGTCTGGACCCCATATCTGGACTATTTGGAACCTGGTCTTCGCCCTATTATATTACAAGGAATATTGTAACTCTCTGGACTTTGGACTTTCTTTGTCCTTTTCTTTATCTTTTTGAAATATGTTTTTTTTCTAACCTGTTATATTATGGTGTAGTCCTGTTTTATATATAAATCTGAGCAATTTGTTGTTGTTGTTGTTTTTGAGGTGTTGTTGTTTTTCTTTTGGTGATGTCTTGTTATATTTGTATTATAATGAAAACTCAATAAACATAATTATTAAAAAAAAAAAAAAATTGTTGATAGTTGTTACTTGTACACTGCTAATCATGTCCACAATAGTATATCAATTGACATCATTTAATTTGTATAGGCCTTCAAGCTAAAAATCTAAATACAGTACTCAAGCTTTAATTTAGTTTATTTTAACGGCTTGCACCTATTCAGTTATAATTAAAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_06335278_06348176.mRNA True 5202 mRNA 0.44 25 6335160 6348853

Neighbor

gene id symbol gene type direction distance location
CI01000027_06329025_06333271 NA coding upstream 1824 6328719 ~ 6333336 (+)
CI01000027_06327905_06328111 NA coding upstream 6940 6327905 ~ 6328220 (+)
CI01000027_06108585_06112721 NA coding upstream 222405 6108585 ~ 6112755 (+)
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding upstream 227165 6103889 ~ 6107995 (+)
CI01000027_06042239_06051165 CBLC coding upstream 283541 6040913 ~ 6051619 (+)
CI01000027_06392269_06407773 PTPN3 coding downstream 42905 6391758 ~ 6407840 (+)
CI01000027_06410011_06426230 EPB41L4B coding downstream 61158 6410011 ~ 6426936 (+)
CI01000027_06458587_06470747 KIAA1429 coding downstream 109734 6458587 ~ 6470747 (+)
CI01000027_06470650_06470837 NA coding downstream 121797 6470650 ~ 6470988 (+)
CI01000027_06477695_06489968 RAD54B coding downstream 128842 6477695 ~ 6490033 (+)
G141038 NA non-coding upstream 9816 6322828 ~ 6325344 (+)
G141032 NA non-coding upstream 32376 6301000 ~ 6302784 (+)
G141044 NA non-coding upstream 34577 6300314 ~ 6300583 (+)
G141037 NA non-coding upstream 35402 6299330 ~ 6299758 (+)
G141060 NA non-coding upstream 36582 6298353 ~ 6298578 (+)
G141117 NA non-coding downstream 2246 6351099 ~ 6354786 (+)
G141093 NA non-coding downstream 59696 6408549 ~ 6408804 (+)
G141080 NA non-coding downstream 60085 6408938 ~ 6409292 (+)
G141114 NA non-coding downstream 89072 6437925 ~ 6440544 (+)
G141113 NA non-coding downstream 95441 6444294 ~ 6445548 (+)
G141052 NA other upstream 63560 6271367 ~ 6271600 (+)
G140924 NA other upstream 369834 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 576290 5756982 ~ 5758881 (+)
G140862 NA other upstream 614395 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1262024 5071693 ~ 5073136 (+)
CI01000027_06706050_06708485 NA other downstream 357524 6705983 ~ 6708513 (+)
G141082 NA other downstream 549558 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 604093 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 1119891 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1601850 7947657 ~ 7951942 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location