CI01000027_06108585_06112721


Basic Information

Item Value
gene id CI01000027_06108585_06112721
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6108585 ~ 6112755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_06108585_06112721.mRNA
GGACTCCACAGGGAGCTGCAGTGCCCGTTAGGTCTCCAAAGGGAGCAGATATCCCCTCACGGATCCCAAAAGGTGCGCTTGTGCATTCTGGGACCTCACAAGGAGCACTTGTGCCTGCAGGTTCCCCACAACAGGTAGAAATCCCTAAGCAGCAGAGGCAAAAGCAGAGAAAGCAGCAGAGAGAGCAGATGCAACAGAATATCCCAAAGGGAGCGTCTGTGCCTCCTAAGACCTCACAGAGAGCACTTCTTCCACCTTGTTCCCCACAAGGAGTGTCCAAGTTTCAACAGGAAGCACTTATGGCTGCCAGTGCTCCACAAGCTGCACCAGTGCCCGTGAACCTGTCCCTATTCCTACAGGGGACCCCCCAGGGAGCAGAAGTGCCCGATACCATAAAGCAAGGGAAATGCTGGATCCCTCAACATCTGAGGCAGCAGAAGCCCAGTCCCTTAGTACAGTCCCTTCCTGGACCACCCATGTCCAGTCAGAGTAAGAGGCTGTGCCCGTGGAGCACAGAAGCACCTTTGATTGATTATGCTAAAAAAGGAGATACTAATGAAAAGTCAATGAAAATGGCTGATTTCTGGCTAACGGAAAAAGATTTGATCCCCAAACTCTTCAAAGTTCTGGCGGTAAGATTTGAGAATCAGACAGGTGGATATACACGCATGGCCCGCATTCCTAACAGAGAGAATCTGGACCGCGCAGCCATGGCTGTCCTGGAGTACAAAGGCAACCCTTTCCCTCCCCTGTTCCCCATGAAACGTGTCAGTGAACTCAGCTTGGTAAACCAACTTCTGAAAGGATACCGAGAAGAAAAAGCTCAAATGGTCACTGAGAAAAAGGACTTATAATCTTTCTTTGTATTTGTACATTATATTTCATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_06108585_06112721.mRNA True 888 mRNA 0.50 3 6108585 6112755

Neighbor

gene id symbol gene type direction distance location
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding upstream 590 6103889 ~ 6107995 (+)
CI01000027_06042239_06051165 CBLC coding upstream 56966 6040913 ~ 6051619 (+)
CI01000027_05994575_05998236 NSMCE2 coding upstream 110232 5994575 ~ 5998353 (+)
CI01000027_05981521_05983935 ZHX2, ZHX2A coding upstream 123882 5981356 ~ 5984703 (+)
CI01000027_05931114_05936800 MYLIPB coding upstream 171628 5931114 ~ 5936957 (+)
CI01000027_06327905_06328111 NA coding downstream 215150 6327905 ~ 6328220 (+)
CI01000027_06329025_06333271 NA coding downstream 215964 6328719 ~ 6333336 (+)
CI01000027_06335278_06348176 NA coding downstream 222405 6335160 ~ 6348853 (+)
CI01000027_06392269_06407773 PTPN3 coding downstream 279003 6391758 ~ 6407840 (+)
CI01000027_06410011_06426230 EPB41L4B coding downstream 297256 6410011 ~ 6426936 (+)
G140875 NA non-coding upstream 91174 6013689 ~ 6017411 (+)
G140893 NA non-coding upstream 148677 5958289 ~ 5959908 (+)
G140869 NA non-coding upstream 197436 5906796 ~ 5911149 (+)
G140950 NA non-coding upstream 286254 5821810 ~ 5822331 (+)
G140894 NA non-coding upstream 355210 5750231 ~ 5753375 (+)
G140889 NA non-coding downstream 53005 6165760 ~ 6170544 (+)
G141011 NA non-coding downstream 84408 6197163 ~ 6199521 (+)
G141023 NA non-coding downstream 108978 6221733 ~ 6223809 (+)
G141029 NA non-coding downstream 127001 6239756 ~ 6239955 (+)
G141048 NA non-coding downstream 137073 6249828 ~ 6250070 (+)
G140924 NA other upstream 143259 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 349715 5756982 ~ 5758881 (+)
G140862 NA other upstream 387820 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1035449 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 1037717 5067917 ~ 5070868 (+)
G141052 NA other downstream 158612 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 593622 6705983 ~ 6708513 (+)
G141082 NA other downstream 785656 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 840191 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 1355989 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009953 mrpl17 coding NC_007127.7 CM002900.2 26020886 ~ 26022068 (+)