CI01000027_06329025_06333271


Basic Information

Item Value
gene id CI01000027_06329025_06333271
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6328719 ~ 6333336 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_06329025_06333271.mRNA
GTATAAAAATGTGGACAAACTTGTTTGACTGTTTGCACTTTTATTATATTTTCCTGCTTTTCTCTCCCCCGCCCACCCTCTCTTACACACACACACGCGGAAGTTGCTGTGACAAGACGAAAACAGGTAGAACGTCTCGTCCTTAAAAAATTGCTTTCTACTTTTCTTTTTTTTAAAAAAAAAAAACACTTTTTAATCGATAAAGGTTCGCTGTTTTAAACAGCTCAGCGATTTTTAGGCATCTTTTAAACTCCTATAAGAAAATATCGCCGTTTATTGAAAGTGAAAGTACAGCTCCAGCCTAACATGGCAGACTGCAGTGACGAAGATATCACAGACAGACCATCTCTTCTCGAATCAGACTTAACGTGTCCTGTGTGCAAAGACATCTTTAGGGAACCCGTGTTGCTCTCGTGTAGCCACAGTTTCTGTAAGCAATGTCTGGAGGGCAGCTGGAAGAACCAGACGAAACAGCAATGCCCGATGTGCCGAAAAAACTGTGACGGAGAGACACCGATCCCCAACCGCGCACTAAACAACACCTGCGTATCCTATAAAAAGGAGAGGAACTGGAGAACAGGTCCGAGTTTCGATGAGGTCAGCTGTGGTTTGCACCAGCGCCCCTTCCAGCTCTTCTGCATTAAAGACGAGGAACCAGTGTGCGTTGACTGCGTGACGCTTCACCCAGGACACGAGCTGGTGCCAATAGATCAGGGAGTACCTTTCTGCAAGGATGAGCTTAACTTGAAAATAAAAATACTGGAAACTAAGCAGGATTCCTTCAAAAGAATGAAAAAAAGATATAAAGACACAATCTCCTTTATTGAGGGCCAGACTAAAGAGGCAGAAAACTTCCAGAAGCTAAAAAGACGAACCCAGTGGACTGGTGAGGATCCAAGGAAGGTTGAAGGAGCTCTTATTAACATGGCCTTGCATGTAGGAGCTTTGGGTTACAAAATCTGGGAAAATATGCAATCTCATATCACATGTTTGCCTGTAATCCTGGATCCCAACACAGTCTCGCCTTGGCTCTCTATATCTCCTGATTTTTCCAGTGTGCAAGAGAGTCCTGAGAGGCAGTCTTTCCCAGACAACCCTGAGAGGTTTGATCCCTGTGTTTTTGTTCTTGGTTCAGAAGGTTTCTCCTCAGGGCGCCACCGTTGGGAGGTTCGTGTGGCTGACCACCCCAAATGGATCTTGGGAGTGTGCAAGGAGTCAGTGGTTCGGAAGAGGAAGTTCACAGTGACAACAAAAGCAGGAGTGTGGACCATTGGCCTGAGTAAAGGGATCTACAATGCTCTGACCACTCCACGCACTGTGCTGAATCTAGAGAGAAGGCCCGAAACCATCAGGGTAAAGGTCAATATGGAGAAGGGAGAGGTGTCCTTCTGGGATACAGGCAACAACAAGCACCTGTGCACGTATAATGATAAGTTCAATGAAAGGCTCTTCCCCATCTTTGGCCCAGGGCTCCAGAGCACACCCATCTCTATCTTGCCTGCTAAAATGACCATACACAAACAATAAGTAAACATGCTCATGCTTAAACCTCCACTAAAGTTGCTATACAGTTTGAATTATATTGAACCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_06329025_06333271.mRNA True 1592 mRNA 0.45 6 6328719 6333336

Neighbor

gene id symbol gene type direction distance location
CI01000027_06327905_06328111 NA coding upstream 499 6327905 ~ 6328220 (+)
CI01000027_06108585_06112721 NA coding upstream 215964 6108585 ~ 6112755 (+)
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding upstream 220724 6103889 ~ 6107995 (+)
CI01000027_06042239_06051165 CBLC coding upstream 277100 6040913 ~ 6051619 (+)
CI01000027_05994575_05998236 NSMCE2 coding upstream 330366 5994575 ~ 5998353 (+)
CI01000027_06335278_06348176 NA coding downstream 1824 6335160 ~ 6348853 (+)
CI01000027_06392269_06407773 PTPN3 coding downstream 58422 6391758 ~ 6407840 (+)
CI01000027_06410011_06426230 EPB41L4B coding downstream 76675 6410011 ~ 6426936 (+)
CI01000027_06458587_06470747 KIAA1429 coding downstream 125251 6458587 ~ 6470747 (+)
CI01000027_06470650_06470837 NA coding downstream 137314 6470650 ~ 6470988 (+)
G141038 NA non-coding upstream 3375 6322828 ~ 6325344 (+)
G141032 NA non-coding upstream 25935 6301000 ~ 6302784 (+)
G141044 NA non-coding upstream 28136 6300314 ~ 6300583 (+)
G141037 NA non-coding upstream 28961 6299330 ~ 6299758 (+)
G141060 NA non-coding upstream 30141 6298353 ~ 6298578 (+)
G141117 NA non-coding downstream 17763 6351099 ~ 6354786 (+)
G141093 NA non-coding downstream 75213 6408549 ~ 6408804 (+)
G141080 NA non-coding downstream 75602 6408938 ~ 6409292 (+)
G141114 NA non-coding downstream 104589 6437925 ~ 6440544 (+)
G141113 NA non-coding downstream 110958 6444294 ~ 6445548 (+)
G141052 NA other upstream 57119 6271367 ~ 6271600 (+)
G140924 NA other upstream 363393 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 569849 5756982 ~ 5758881 (+)
G140862 NA other upstream 607954 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1255583 5071693 ~ 5073136 (+)
CI01000027_06706050_06708485 NA other downstream 373041 6705983 ~ 6708513 (+)
G141082 NA other downstream 565075 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 619610 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 1135408 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1617367 7947657 ~ 7951942 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location