CI01000027_05994575_05998236 (NSMCE2)


Basic Information

Item Value
gene id CI01000027_05994575_05998236
gene name NSMCE2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5994575 ~ 5998353 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05994575_05998236.mRNA
ATGTCTCTAAGCTCAGTACAGTCCACCTTGTCCACTCTGAAGTCATGTCAAGCAGATATTGGAGCTTGTATGGACATGATATCAGACGTTGCACTGGGAATAGTCGAAGCACAAGGTATGGACAACAGTCCAGCTCTGAAGAAACTGGAGGAGATGATTCTGGAGTGTTCCAGACTGGACAGAGAAATCAATTGTTTTGTGGAGTCTGTTGATGAGAAAACTGCTCAGGTCAGAAATGAACCTCCAGAGGCCATGGTTCATCTGAGAAACTCTGTAAAGGACCGTTTCAGTGAGTTAATGGCTGGAGTTTCAGATGCAGACCTGCAAAGGCACAGCAAGGTGGTTGCCTTCAAAGACAGTGTCAGGAAATATGCCATGCAAGGTCAAACTGATGCTGAGAACGAAGAGGAGGAACTCGATGAGGACATTGCTGTAACACAGAGCCAGACAAACTTCATCTGTCCTCTCACACAGGTTGAGATGGTCAATCCAGTAAAAAACAAGAAATGCAATCATTACTATGACCAAGCGGCTGTACTTGAAATGATTAAGGCCAAGCACAAAAATAAGAAGAATTTTCGGTTCAACGCACTAATACTGGGAGTCTCTGAGTCCGTTTCAGTGTTGGTCCATGTCCCCATGTCTCTTTGCACCAGTCCAAGCGTGGTGGAGGGTTGTATCTGTCGAGATTCTGAAATCGCCATGGTTGTTCTATCCGATAGTGACACCAAAGCCACACTGAAACTTGTTCTTGCGGTGGTTAAGGAAGGCGCCTAGAGCTAATGATAGAGGAAGGGGAAGCAGCTTCTTTTCCAGCGTCGCTCCCACCACCCAATTGCTGTCTAAAGAACCTGAAGAACAAGGTTGAAGAGGAGAGGTAAGCTTAGCAGCAGA

Function

symbol description
nsmce2 Predicted to enable SUMO ligase activity. Predicted to be involved in double-strand break repair via homologous recombination and protein sumoylation. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Seckel syndrome 10. Orthologous to human NSMCE2 (NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase).

GO:

id name namespace
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05994575_05998236.mRNA True 894 mRNA 0.46 6 5994575 5998353

Neighbor

gene id symbol gene type direction distance location
CI01000027_05981521_05983935 ZHX2, ZHX2A coding upstream 9872 5981356 ~ 5984703 (+)
CI01000027_05931114_05936800 MYLIPB coding upstream 57618 5931114 ~ 5936957 (+)
CI01000027_05882855_05906234 JARID2A coding upstream 88341 5882855 ~ 5906234 (+)
CI01000027_05836494_05847115 NA coding upstream 146974 5836494 ~ 5847601 (+)
CI01000027_05820700_05833750 DYNC1I1 coding upstream 160334 5820467 ~ 5834241 (+)
CI01000027_06042239_06051165 CBLC coding downstream 42560 6040913 ~ 6051619 (+)
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding downstream 105536 6103889 ~ 6107995 (+)
CI01000027_06108585_06112721 NA coding downstream 110232 6108585 ~ 6112755 (+)
CI01000027_06327905_06328111 NA coding downstream 329552 6327905 ~ 6328220 (+)
CI01000027_06329025_06333271 NA coding downstream 330366 6328719 ~ 6333336 (+)
G140893 NA non-coding upstream 34667 5958289 ~ 5959908 (+)
G140869 NA non-coding upstream 83426 5906796 ~ 5911149 (+)
G140950 NA non-coding upstream 172244 5821810 ~ 5822331 (+)
G140894 NA non-coding upstream 241200 5750231 ~ 5753375 (+)
G140858 NA non-coding upstream 313116 5619656 ~ 5681459 (+)
G140875 NA non-coding downstream 15336 6013689 ~ 6017411 (+)
G140889 NA non-coding downstream 167407 6165760 ~ 6170544 (+)
G141011 NA non-coding downstream 198810 6197163 ~ 6199521 (+)
G141023 NA non-coding downstream 223380 6221733 ~ 6223809 (+)
G141029 NA non-coding downstream 241403 6239756 ~ 6239955 (+)
G140924 NA other upstream 29249 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 235705 5756982 ~ 5758881 (+)
G140862 NA other upstream 273810 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 921439 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 923707 5067917 ~ 5070868 (+)
G141052 NA other downstream 273014 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 708024 6705983 ~ 6708513 (+)
G141082 NA other downstream 900058 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 954593 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 1470391 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009945 nsmce2 coding NC_007127.7 CM002900.2 25664078 ~ 25672591 (+)