CI01000027_05836494_05847115


Basic Information

Item Value
gene id CI01000027_05836494_05847115
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5836494 ~ 5847601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05836494_05847115.mRNA
ATGGATCCAGTGCAAGCAGATGGTGCATCAGTTTTCATGTGCAAAATATGCAACTTGTTCTCTCCCAGTAAACCTTTGCTGCTGTCTCATGTTATTGAGACTCACTCCAATGAAGGAGGTGATCCTGATACTTTCATTATAGCACTTAAGCCATTAACAACTCAGGAGCCACAGAGTTCAGATGTTGTTGTGAAAAGAAAGCGTGGAAGACCAAAAGGTTCCACTAAGAAAGTCCAAACAGAAAATGTCCAGAAAAAAACATCCAGTCAGCAGGAGAAAGAGTCCACTGACATTCAACCAGGAACAGTAGCTGAAGAGCAGAGTGAGGATGGAAGTGATCTGGAGTGCAAGAAATGCAATCGCATGTTCAGCAACAGGCGGCAAATTTCCAAACACATTTGTTTTGTAGGACTGAAAGAGGCTGCTGATGAAGAAGAGTATAATGGTCAAAATACTGATGCAAACAGAATCAGTGATGGAGAGGAAGACAAAGAGCGGACACCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACCCTGAATCAGCAAGCGGCAACAAAAACCCTATTATTAGTGTGGTCCTTACTAGTCACGAGGCCATGCCTGGTGAGATGTTAGGACAGACGCAACTTAAAATCTTCACTTGTGAATACTGCAATAAAGTCTTCAAGTTCAAACATTCACTGCAGGCCCACTTAAGAATCCACACCAATGAGAAACCATTCAAGTGCACGCAGTGTGACTATGCTAGCGCTATAAAGGCCAATCTTAGTGTTCATATGCGGAAACACACCGGGGAGAAATTCAGCTGTGACCTCTGCTCGTTTAATTGCCTCAGTAAAGGCCACCTCAAAGTGCACGTGGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGATTCTGCAAGAAGAAATACTCTGATGTGAAGAACCTTCTTAAACACATCCGAGAGACTCACGACATGAACGACAAGAAAGTACAGGACTCCTACGAAGAGTACAGCCTCCAGACCAGGGAAGGCAAGAGACAGCTTCTGTACAACTGCCAAATATGCGACCGCAAGTTCAAAAACGAGCTTGAGCGCGACCGTCACATGATGGTCCATGGCAACAAGAGACCCTTCGGCTGCGAGTTATGCGATCACGGCTCGACCAAGTTCCAAGCCTTGCAAGCCCACATCCGAAAGCATCCTTTCATCTACGTGTGTGCCATTTGCCAGGAAAAATTTGTCAGCTCTGTGCGACTGAGGTCACATCTCCGAGAGTTCCACCCGGAATCGGATGAGCCCTCAGCTTTTGCAGACTCCATCAACTCCAGCTTTTGCTTACTGAAACCAGGTGATGACATTCAGAAGGACATGTTGAATCAGGATGAGCTTAAGATCACAGAAGAGCTGTCGCAGCTCAACGCCCAGGAGCTGTTAACCACAGAAATTAGTTGCATGACTCAAGAGGACCTTCAAACTCAGTGCTCTGATAATATAGTGGTCGAATCAGATCTTCTCATTCAAAACTCACAAGACGGAAATACCATTACGAATAGTATAAACGAGACTGACACATCTGCAGTAGCACAAACACAAGAGACGGTCTGTGAAGATGTGATAAATACGCAAAGACTTCAAGATGATCAGCACGGTGAGACAGAAGAGCAGAATCCTGCTCAAGAAACCGCACCTTTGACAGCTGAAAAAGCACAAATGCACTCCGAGCAGGAAACGTTTCCTCAAACTGAGGAAGAGGCGATTGTTTCACAAACTAACACCGATGAAGACTTGCTCAGTTCAGAGCAAGAAGAAATATCTGCTTTCAAGCAGATTGTAGAGCAGATGCAAAAACGCCAGCTTAACATGGAAATGTTTGAACGGATACGGAAAGTGTACGGAGACCTTGAATGTGAATACTGCGGTAAGCTTTTCTGGTATCAGGTGCACTACAATACACATGTGCGAACACACACAAAAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACTAAAAACTGCCTGAAGCGCCATGTCATCCAGAGACATTCTGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAGTATTGTACACCTGACAAATACAAGCTACAAGCTCATCTCAAAACCCATTCGGACATAGTCAAAAGAAGTTTTACATGTCCAGTATGTCAAGAGTCTGTTCCCGAGGACAAAGTTAGAGCTCATATCAAAAGCAACCATCCAGATGTGTCGTTGAACTACATCTCGGAAGCGCTGGGAATACGTGTACATGTGAAAGGAGTGATCGGGAAACGAGCTTCCAAATGCCCGTATTGTGACTGTTTCTTCACAAGGAATGGGGCAGATCTTCAGCAGCACATATGGGCTCATGAGGGATTGAAACCGTACAAATGTTCACAATGTGAATATGCCTCAAGAAGTAAGAGCAACCTCAAAGCTCACATGAACAGACACAGTACTGAGAAAACACATCTTTGTGACCTCTGTGGGAAAAAGTTCAAGTCTAAATGCACTCTGAAAAGTCATAAGGTCATGCACACAGCAGACGGTGGAGTCAAATGTCCTGTTTGCAATTACGTTTATGGCACTAAATGGGAAATGAACAGACACCTGAAGAGCAAACATGGCCTCAAAGTGGTGGAGACTGACAGTCTGGGTCTGAATCAGTGGGAGGTGGTGGAGTCAGTAGAGGAGCCGGCCATGCAGTACCTTCATATAGCCGAGACTGAGGATCCACAAGGAACTGAGACTGCTGTATCCGCTCTGCAGGACCTGCGCTTTAATACACAAAATGGCGTTGTGTCTGCAGCAGCGGGAGACAGACTAGACCCGGCATCTGTCAACATCCTGCAGCAGATCATTGAACTGGGCTCAGAGAATCATGATGCCACTGTGGCTTCTGTGGTTGCCATGGCTCCCGGTACAGTTACTGTTGTAGAGCAGATGGAGGAGGAGGAACCGCAGACCAATCATGCCATGATGATCCAGGATGCACTTCAGCAGGCCACAGTGGGCCTGGCTGAAGAGCACCATCTAGTGGTGTCTTCAGATGACATGGAGGGCATCAAAACTGTTACAGTGTACACCCAGGGTGAAGACGCATCCCAGTTCATAGTCTACGTTCAGGAAGCAGTTCAGGAGGCTGTGCAAACTGAGGAGACCACCACAGTATAGAGAATATAAAGACCATGCATAGAGGGTAGCTGCCTAGCTCAAATGCTCCGAAGTGTTTTTCTTCCGTTTTGTTAGTTACTCCAGACTTGAACAGACTATTGCAGCCTTACCTATAGTTTATAGGGACGTATCTTGCACAATTGTAAATAATCTGAAATGAACAGTAGCAATGAATAGAGCTGTGCTGCAAAAAATAGGTGATATTTTTCCTGACTGGGAGTAAAAAGGTCTTTAGTCTTTAAAAATCACAGTAGCTAAACCCTGTTACACATGAAGCAGAAGCTGTTCTAGAAATTATTTTTTTCTCTGTACTGTCATTGCCTAGAAGAGTTACTGTGTGACTCTGGCCTTCTCCACACTTTTTATATAAGACTCCCATACAGTGTATGGCTATCATAATAGTAAACTTGAGTTATTTAATGTGCGCTGTTGAGTGTATTATTGACACTTCATTGAATCATTTCATAACTATGATTTTGCCATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05836494_05847115.mRNA True 3678 mRNA 0.45 13 5836494 5847601

Neighbor

gene id symbol gene type direction distance location
CI01000027_05820700_05833750 DYNC1I1 coding upstream 2253 5820467 ~ 5834241 (+)
CI01000027_05807381_05817636 TBC1D31 coding upstream 18829 5807029 ~ 5817665 (+)
CI01000027_05805062_05805690 NA coding upstream 30471 5805062 ~ 5806023 (+)
CI01000027_05789308_05795504 FBXO32 coding upstream 40435 5789156 ~ 5796059 (+)
CI01000027_05781043_05784234 KLHL38B coding upstream 52079 5780606 ~ 5784415 (+)
CI01000027_05882855_05906234 JARID2A coding downstream 35254 5882855 ~ 5906234 (+)
CI01000027_05931114_05936800 MYLIPB coding downstream 83513 5931114 ~ 5936957 (+)
CI01000027_05981521_05983935 ZHX2, ZHX2A coding downstream 133755 5981356 ~ 5984703 (+)
CI01000027_05994575_05998236 NSMCE2 coding downstream 146974 5994575 ~ 5998353 (+)
CI01000027_06042239_06051165 CBLC coding downstream 193312 6040913 ~ 6051619 (+)
G140950 NA non-coding upstream 14163 5821810 ~ 5822331 (+)
G140894 NA non-coding upstream 83119 5750231 ~ 5753375 (+)
G140858 NA non-coding upstream 155035 5619656 ~ 5681459 (+)
G140946 NA non-coding upstream 226316 5609873 ~ 5610178 (+)
G140920 NA non-coding upstream 228379 5602529 ~ 5608115 (+)
G140869 NA non-coding downstream 59195 5906796 ~ 5911149 (+)
G140893 NA non-coding downstream 110688 5958289 ~ 5959908 (+)
G140875 NA non-coding downstream 166088 6013689 ~ 6017411 (+)
G140889 NA non-coding downstream 318159 6165760 ~ 6170544 (+)
G141011 NA non-coding downstream 349562 6197163 ~ 6199521 (+)
CI01000027_05757143_05758496 NA other upstream 77624 5756982 ~ 5758881 (+)
G140862 NA other upstream 115729 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 763358 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 765626 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 780555 5050310 ~ 5055755 (+)
G140924 NA other downstream 115605 5963206 ~ 5965326 (+)
G141052 NA other downstream 423766 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 858776 6705983 ~ 6708513 (+)
G141082 NA other downstream 1050810 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 1105345 6951132 ~ 6957767 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009939 zfat coding NC_007127.7 CM002900.2 25342152 ~ 25360788 (+)
bowfin (Amia calva) G88242 LOC106595015,LOC106598893,LOC106597821 unknown CM030130.1 CM030130.1 28781802 ~ 28783281 (-)