CI01000027_05882855_05906234 (JARID2A)


Basic Information

Item Value
gene id CI01000027_05882855_05906234
gene name JARID2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5882855 ~ 5906234 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05882855_05906234.mRNA
GATAACGATGGGATCCCATGGTCGGAAGAGAGAGTGGTCCGCCGGGTGCTCTACCTCTCACTTAAAGAGTTTAAGACTGCTCAAAAGAGCAAAGTGGAGAATGGCACTGGAATAGTTAATGGCTCCTTTGCAAATGGTCATTTGAATGGTTCGGGAACTAAATCTGGGCTGTTTGCTGGAAGCTGTAAGTCAGACAGGACACAACATGCAGTTCAGAGCAAAGACTGCAGCCATGAGTATTCAATTGAAGGGCCTGTCAGAAAGAGGCCAAGACTGCAGGCTCAGAGGAAGTTTGCTCAGTCTCATCCCTGTTCTCCCAACGCCACCCCGCTGAAAGTGCTGGAGGCCATGCCCCCAAGCCCAGCCGCCCTGTTCAATCATCTCACAAGACGCAAACCCAAAACTGAAGACTTCCTCACTTTCCTCTGTCTAAGAGGCTCTGCTGCGTTGCCCAGCAACATGACATACTTTGGTAGTGCTAAGGATGATGAAGATGTAGATGAGGAAGAGGATGAGGAAGAAGACAGTGCTAGCAATGCCCCTGCTTCCTGCCAGTCAACTCCACGCAAGAGCAAAGGACCCAACAAATGCATCGCCAATGGTCATGTATTTAATGGGCAGACACGAGCTGCTGAGGAACACGAAAGCAGTTTGAGGGCCAGAGGGAAAGACGGGGTCCATGGGAAGGAGAAGAACTCTGTAGCAGCAGCTAGGACCTCCACTACACACAATCTACGACCCAACCGGGCTGTACCAGATCAAAAACAGTCTTTTTTTGTCATCCCTCAGCCCTCCAAAATGAACGGAACATCGGGAGCCTCCTCTATCAGTTCTAGGAAAACGAGAGAACTCCGTACTCCCCCGACCAAAGCTGTGAAATACCCCAAGGGCCACGTGACTTACACCAAAGCCAGACTGCTCAAAGAGGCCAAGCTTAGCCTGAGCGCACACACACACACACGCCACACCCACACACGCCACACCCACACACACTCCAACTCAGGAAAAGCCCAAACCAGCCACGCCAAGATGCAAAAACAGGTGCTATCACCAGCAACAGCTGGGAGGCTGAGTGGGACGGACACTTTCCCACCCAGACGAAATGGACTGAGACAGTCAAAGAGGCAGTTGGAGTTAGCCGGGGTTAATCTGACTGGAGCAGAGGTCGAGGTAAAGAGGGTCAAAGTGCAAGTGGTTCCCTTAGAGACACGAAGTAGGAAAGCAGCTCAGGAGACACCGGCGAGACCAAGATCGCAGCGGCCCAAACGGGCCACGGCGGGGAAGCTCATGTTCACCAAACAAATGCACTGTAAAGCCGCCGTTCTGGCCAAGAACAGCCCCACTACCTCAACACGAGACATTTTGAAACCAGCCAACTCCCCCAAACTATCAGAGACCCCCAAAACAAGCAATGCTCTAAAACAAGGCAATCCTTCTAATGTGACTGAGCCCCTCAACCCAGCTGAGCCTAAAGAGCGAGGCCGGCGCAGCGCCGAGGTCACAGAGGTTCCCGTTTTCTATCCTGGCACACGTGAGTTCCATGACCCGCTAGCTTATATGGAGTTTGCGCGGGGGCAAGCGGAGGCGTTTGGGTTGTACCGGATTGTTCCGCCAGCGGGCTGGCGTCCCGAGTGTAAGCTTAAAGAGGAGATGCGCTTTGTCTCGTACGTGCAGCATGTGCACAAGCTGGGCAGACGCTGGGGCCCAAATGTACAGCGGTTGGCCTGCATCAGGAGACACCTGCGGACACAAGGCATTAATATGGAAGAGCCTCCACTTATAGGTGGCTGTGAGCTGGACCTAGCCAGATTCTTCCAGATCCTTAATGAGATGGGGGGCATGCAGCAGGTGACAGACCTGAAGACGTGGGGCCGGCTCGCCGATCTGCTGGGCATCCCGCGCTCGGCTCAAGATAGGCTGGCCAAGCTCCAGGAGGCGTACTGCCAGTACCTGCTCTCCTACGACTCCCTGTCACCAGCCCAGAGGGCCCAGTTGGAGAAGGAAGTGCTGGCAGAGAAGGAGACCCTGGAGAGAAGAAGTGGGCCCCTAGAGGGCCAGGGAGACATATCCCAGCATGCCGCTCTTCTGCTTCCACGCTGCGAGCCCAAAAATGGGCTGGTGAACGGAGCGTTGCACCGGAGCGGAGCGCGTGAGCACCTCAGAGAGCTGGACCCCACGGCGAAAACCACCCGGCAGAGAAGACTAGAGAAGAGAGGGGAGGAAGAAGGGGTGATAAATGAACAACACAAGTGCATATACAGGGGGAAATCGTTCTCTTTGACAACGTTCTACAGGGCAGCCAGGAATACTATGAACATGTGCTTCAGCAAAGAGCCAGACACTGCTGAAGTTGAGAAGGAGTACTGGAGATTGGTTGAGGAAAAGGAATGCCATGTTGCTGTGCACTGTGGGAGGGTTGACACAAAGACTCATGGGAGTGGATTTCCTGTGGGCAAGTCTGAGCCATTTTCAAAGCATGGATGGAATCTTACTGTCCTTTCCAATAACTCAGGATCCATCTTGCGTCATCTTGGTGCTGTGCCAGGAGTGACCATCCCCTGGCTGAACATAGGCATGGTCTTTTCTACCTCATGCTGGTGTCGGGACCAGAACAGCCTTCCGTATATTGATTACCTACACACTGGTGCTGATTGCATTTGGTACTGTATTCCAGCTGAAGAGAAATCAAAACTTGACAAAGTAGTACACACACTGCTACAGGCTAACGGCACTCCAGGGCTGGAGATGCTAGAGAGGAACATTATGGTGAGAGAGGAA

Function

symbol description
jarid2a Predicted to enable histone demethylase activity. Predicted to be involved in chromatin remodeling. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11478 JARID2, JMJ; protein Jumonji

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05882855_05906234.mRNA True 2778 mRNA 0.53 12 5882855 5906234

Neighbor

gene id symbol gene type direction distance location
CI01000027_05836494_05847115 NA coding upstream 35254 5836494 ~ 5847601 (+)
CI01000027_05820700_05833750 DYNC1I1 coding upstream 48614 5820467 ~ 5834241 (+)
CI01000027_05807381_05817636 TBC1D31 coding upstream 65190 5807029 ~ 5817665 (+)
CI01000027_05805062_05805690 NA coding upstream 76832 5805062 ~ 5806023 (+)
CI01000027_05789308_05795504 FBXO32 coding upstream 86796 5789156 ~ 5796059 (+)
CI01000027_05931114_05936800 MYLIPB coding downstream 24880 5931114 ~ 5936957 (+)
CI01000027_05981521_05983935 ZHX2, ZHX2A coding downstream 75122 5981356 ~ 5984703 (+)
CI01000027_05994575_05998236 NSMCE2 coding downstream 88341 5994575 ~ 5998353 (+)
CI01000027_06042239_06051165 CBLC coding downstream 134679 6040913 ~ 6051619 (+)
CI01000027_06103946_06107995 TRYPSASE, TRP-IA, PRSS59.1, PRSS59.2, TRYP, TRP-II, TRP-I coding downstream 197655 6103889 ~ 6107995 (+)
G140950 NA non-coding upstream 60524 5821810 ~ 5822331 (+)
G140894 NA non-coding upstream 129480 5750231 ~ 5753375 (+)
G140858 NA non-coding upstream 201396 5619656 ~ 5681459 (+)
G140946 NA non-coding upstream 272677 5609873 ~ 5610178 (+)
G140920 NA non-coding upstream 274740 5602529 ~ 5608115 (+)
G140869 NA non-coding downstream 562 5906796 ~ 5911149 (+)
G140893 NA non-coding downstream 52055 5958289 ~ 5959908 (+)
G140875 NA non-coding downstream 107455 6013689 ~ 6017411 (+)
G140889 NA non-coding downstream 259526 6165760 ~ 6170544 (+)
G141011 NA non-coding downstream 290929 6197163 ~ 6199521 (+)
CI01000027_05757143_05758496 NA other upstream 123985 5756982 ~ 5758881 (+)
G140862 NA other upstream 162090 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 809719 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 811987 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 826916 5050310 ~ 5055755 (+)
G140924 NA other downstream 56972 5963206 ~ 5965326 (+)
G141052 NA other downstream 365133 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 800143 6705983 ~ 6708513 (+)
G141082 NA other downstream 992177 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 1046712 6951132 ~ 6957767 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009940 jarid2a coding NC_007127.7 CM002900.2 25407021 ~ 25500729 (+)