CI01000027_06604099_06652019 (GALNT1)


Basic Information

Item Value
gene id CI01000027_06604099_06652019
gene name GALNT1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6604099 ~ 6652188 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_06604099_06652019.mRNA
GTGTGAAGATGAGGAAGTTTGCGTACTGTAAGGTGGTGCTGGCCACTTCTCTGGTGTGGGTGATGATAGACATGTTCATCCTCCTCTACTTCAGCGAATGCAACAAATGCGATGACAAAAAAGAGAGAGGATTGCCGGGGAGAGACACTGTGGTTCAGAGGCCTCATGACGGCCCAGGGGAGATGGGAAAGCCAGTGGTCATCGCTAAAGACCAGCAGGAGAGGATGAAGGAAATGTTTAAGATAAACCAGTTTAACCTGATGGCCAGCGAGATGATCGCACTCAACCGATCTTTACCGGATGTCCGGCTTGAAGGGCGCGACCATGGAAACTATTCCACCATGACAGTAATGTCACATGGGGTCTCTAAGCCAAGTAAAGCAGAATTTCAACTGTTTTTAGAGCTTCTCACACTGGATGAGATGCGTTCGCAGTCTCTTCAGCAGCTCTCCACTTACCGCTTCTCTATAACAGCCTGTGTGTTTCTGATAAGTGCTAATCTCCTCTCATCTCATACAGCTCTCTGCAGCTCTCCAGACCCTGTCTGGGCTCAGGAGGGGAGAGAATTTCAGAGAATGTGTAAAACAAAGGTGTATCCAGACGGTCTTCCACGCACCAGTGTGGTGATCGTGTTCCATAATGAAGCGTGGACCACACTGCTCCGAACAGTCCACAGCGTCATCGACAGGTCTCCGAGACACCTGCTAGAGGAAATCGTGCTAGTAGATGATGCCAGTGAGAGAGCACTGAATCATTTTCTCTGCCACTGCACTGCCGTCACTTCTCCCCACATTGATGTTAACAGAGACCTGCCGAATGTCAAGACAGTGACACGACCAGACACGCAGAACATTTATGAAAATATATGGTCTCGATGGCAGCTGCTTTGGAGTGTCTCTGACCTCTGCATACATGACCTCTGCGTGACTCTGTTGCCCTCTGGCATCATTGCCATGGCTGCTGAAAGCCCTGCACGGGTGCTCCATGTGACCCGGCTCGGGGTGGACAGCTCCGAGGTTCCTCTTTGTATCTCTTTTGCTCTCTTTGAGTTATCAGATATATGGTTTGTGTTGGAAGACTTTCTGAAGCGGCAGTTGGAGCAGTATGTGCGGAAGTTGGAGGTGCCGGTCAGGGTGGTACGGATGGACCAGCGCTCGGGCCTGATTCGCGCTCGGTTGAAGGGGGCGTCCATCTCCACAGGTCAGGTGATTACCTTCCTGGATGCCCACTGTGAGTGCACCACCGGCTGGCTTGAGCCTCTCCTTGCTCGCATCAAACTTGACAAGAAAACCGTAGTGTGTCCCATCATTGACGTGATCAGCGATGACACATTTGAGTACATGGCAGGGTCTGATATGACATATGGTGGGTTCAACTGGAAGCTGAACTTCCGCTGGTATCCGGTACCACAGAGAGAGATGGACCGCAGGAAAGGAGACAGAACGCTGCCTGTCAGGACCCCCACCATGGCAGGTGGTCTCTTCTCCATAGACAGAGATTATTTCCAGGAGATTGGCACATACGATGCAGGCATGGACATCTGGGGAGGAGAAAACCTGGAGATTTCCTTCAGGATTTGGCAGTGCGGGGGGACGCTTGAGATAGTCACGTGTTCTCACGTCGGTCACGTGTTCCGTAAGGCGACGCCGTACACGTTCCCTGGTGGAACTGGGCAAATCATCAACAAGAACAACAGAAGGCTGGCAGAGGTCTGGATGGATGAGTTCAAGAACTTCTTCTACATCATCTCACCTGGTGTGACTAAAGTGGATTATGGAGACATCTCTTCCAGAACATCCCTGAGACAGAGACTGCAGTGTAAGCCGTTTTCCTGGTACCTTGAAAATGTCTACCCAGACTCCCAGATACCACGTCACTACTACTCGCTAGGAGAGATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAGGAAAGAGAATGAGAAAGTGGGCATTTTTAACTGCCACGGCATGGGCGGCAACCAGGTTTTTTCGTACACAGCCAATAAAGAGATCCGAACTGATGACCTCTGTTTGGATGTGTCCAAACTTAATGGTCCGGTTATGATGCTCAAGTGCCATCACTTGAAAGGCAACCAGCTCTGGGAATATGACCCTGTGAAGCTGAGTCTGGTACACGTGAACAGTAATCAGTGTTTGGATAAGGCGTCTGAAGATGACAGTCAGGTGCCCAGCGTCAAGGACTGCACCGGGGGCCGCTCGCAACAGTGGCTCCTCCGCAACGTCACACTGCCTGAGATATTCTGAGATCGCACACGGACGGACAGATGGACAGACTCTCACACCGACGCTGATGGAGAGAGCGTGAGAGAAAGGACTGCTTTCCTCTCAATCCTGGTGGTCTGCCTTCAAATGATCTAAAATAACAGAACCACATATGTATATGAATCTCCCCATCACTCCACCTTGCCGAGGA

Function

symbol description
galnt1 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1).

GO:

id name namespace
GO:0008921 lipopolysaccharide-1,6-galactosyltransferase activity molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_06604099_06652019.mRNA False 2445 mRNA 0.51 16 6604099 6652188

Neighbor

gene id symbol gene type direction distance location
CI01000027_06504915_06514535 NA coding upstream 88949 6504311 ~ 6515150 (+)
CI01000027_06495825_06497691 GEM coding upstream 106021 6495351 ~ 6498078 (+)
CI01000027_06477695_06489968 RAD54B coding upstream 114066 6477695 ~ 6490033 (+)
CI01000027_06470650_06470837 NA coding upstream 133111 6470650 ~ 6470988 (+)
CI01000027_06458587_06470747 KIAA1429 coding upstream 133352 6458587 ~ 6470747 (+)
CI01000027_06706050_06708485 NA coding downstream 53795 6705983 ~ 6708513 (+)
CI01000027_06785671_06803146 NR4A3 coding downstream 133483 6785671 ~ 6803213 (+)
CI01000027_06811768_06817052 NA coding downstream 158906 6811094 ~ 6817163 (+)
CI01000027_06859191_06877582 NA coding downstream 207003 6859191 ~ 6877625 (+)
CI01000027_06906104_06909909 NA coding downstream 253916 6906104 ~ 6910164 (+)
G141147 NA non-coding upstream 67507 6536377 ~ 6536592 (+)
G141146 NA non-coding upstream 69776 6534084 ~ 6534323 (+)
G141145 NA non-coding upstream 73281 6530592 ~ 6530818 (+)
G141138 NA non-coding upstream 110699 6493154 ~ 6493400 (+)
G141097 NA non-coding upstream 147733 6453119 ~ 6456366 (+)
G141106 NA non-coding downstream 11827 6664015 ~ 6666990 (+)
G141111 NA non-coding downstream 27644 6679832 ~ 6680388 (+)
G141160 NA non-coding downstream 42090 6694278 ~ 6694549 (+)
G141166 NA non-coding downstream 69316 6721504 ~ 6721759 (+)
G141170 NA non-coding downstream 78286 6730474 ~ 6730733 (+)
G141052 NA other upstream 332499 6271367 ~ 6271600 (+)
G140924 NA other upstream 638773 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 845229 5756982 ~ 5758881 (+)
G140862 NA other upstream 883334 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1530963 5071693 ~ 5073136 (+)
G141082 NA other downstream 246223 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 300758 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 816556 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1298515 7947657 ~ 7951942 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002426 galnt1 coding CM030136.1 CM030136.1 13728610 ~ 13741394 (-)
mexican tetra (Astyanax mexicanus) G16839 galnt1,LOC107593713,LOC107657719 non-coding NC_035899.1 CM008302.1 6689720 ~ 6800136 (+)