CI01000028_02112434_02123527 (PLD3)


Basic Information

Item Value
gene id CI01000028_02112434_02123527
gene name PLD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2112434 ~ 2124287 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_02112434_02123527.mRNA
ATGACTCTCATAACCTGCACAGCATTTCTTCATTTTCTCTACATCTTCAAAAACACTTCCACTTTTAAGTCAGATGATATCCCAGAGTTCCAGCTGCGTGTGAAAGATTTGCCAAGCTCATCAAGACTGCTCGTGGGATTTGTATTTCCTCCTAATGTGCTGATTGTTGATGTGGAGCTAAGCAGAGGAGAAGGGCATGTTGGCTCACAAAAGTATTACAGGTGTCTGATCATCCTCAGCTGTGTAACCACAGTCTTGTTGATACTCCTGTCACTTCAAACCCTGCTTGTTCCAATGGCAACATCCTCCTCCTCAAAATCATGTGGACAGCAGGAGCATCTTCTAATCAGAGAAACCTGTACTGATCCCTGCAGGATTGTTTTAGTGGAGAGTATTCCTGAAGACCTGGTGTTTAACTCCACTACCACTCATCAGTCCATATATGAGGCCTGGCTCAACCTTATATCTGGTGCTCAAACCAGTCTGGACATCGCCTCTTTCTATTGGACTCTTACCAATGAGGACACACACACACAAGAGGCCACAGCTAGTCAGGGTGAGCGGATTCTGCAGGAATTGGGGCAGGTCTCGGGGAAAGTGTCTGTCCGAATTGCAGTCGATAAACCATCAGAGACAAAACCTCTGGATGACATTAGTTTCCTGGTCAATTCTGGAGCTAATGTGCGGATGGTGAATATGCGAGAGCTGACGACAGGTGTTCTGCATACTAAATTCTGGATTGTGGATAAAAAGCATGTTTACATAGGGAGTGCAAATATGGACTGGAGGTCACTAACACAGGTGAAGGAGTTGGGTGCAGTTGTGTATGACTGCAGCTGTCTTGCTGAGGACCTTGGGAAGATCTTCGAGGCTTATTGGTACCTGAATCAGACCACAACAGTTCCTGTACACTGGCCCAGCAAATTTTCCACCCTGTACAATAAAGACACACCGATGCAGCTGTCACTCAACGGGACCGATGCCAGTGTCTATCTATCAAGCTCTCCTCCTTCATTGTGCGCTGAGGGTCGGACTTCAGACCTGCAGTCTATCCTCAGTGTGATCGCTGATGCCCAGCAGTTTGTCTACATCGCTGTGATGAACTATCTTCCCACTATGGAGTTCTCCAGCCACAAGAGGTATTGGACGGATATTGATACCCAGCTGCGGCGCGTGGCTTATGAGCGCAAGGTTCATGTGCGTCTGTTGATCAGCTGTTGGGAAAGCACCAACCCAATCATGTTCCCTTTCCTCCGCTCACTCGCTTCCTTACAGGACAAGAACAAGCTGGATGTTCAAGTGGTGAGTGCCATCAGGGAGGCTCTTCAAGTGCTTGACAAGCTGTGTAGTCTGTATGTTACTTCAGAGAAAATTTTTACTGTGCCTTCAAACCCTCGACAGAAGAAAATTCCCTTTGCCAGAGTCAACCATAACAAGTACATGGTCACAGATAAGGTTGCTTATATAGGTACCTCGAACTGGTCAGGTGACTACTTTGTGAACACAGCTGGCTCTGCTTTAGTGGTGAACCAGACTTCAGCTCAGTCCGAAAGCCCTACAGTCCAGGAGCAGTTACAGGCCGTGTTTGAGAGAGACTGGGACTCTCCGTACAGCACTGACATTAACCACAGAACCAACCGTAAAGTCATTTGCTAGTCAAGGCTGCGTCTGTGCTGTGGCCTTGATACTGCAGGAGGCGCTGTTGAGTGCTGTGTCAAACACTGCGAATGGCATTTGGAGTATGGTATTCAGGGCATGTACAGCATAGATTTATGCTCCATTTTTAGGCTCAAAAATTCCTGCTCCCCTGACCATCTTGCTATGAGCTATTTTTGCACTCCTATAAGTGCACTAAACAAGAGTTGGGAGTTAAAGACATTTTTTTGATAATAATTGTCACACTTCAAACCAGTTGCATATATTTTGCACAAAATGTCTTTTAAATGACATGCAATACCTCTTAACAGAAATGTCTTCCTGTTGATTGATCATATTTAGCGTGTTAAATCTATAGTGTCTCAGGAAGAATCGTTTTACCATTGTTTGAAAATATCGTTCATAGCTGCTTTCTCTTTCTAAAGTGATTTCATAATTGCTGTGTGCTGTCCTATACAGCTTAAGTAGACTTAATTCAAAAAATCTTAATTTTTTTTTTTTTTTAGGTCTTAAATCTGGAAGTGAAAATGCCACAGTGTTTATGTAGTTACAGTTCATAAATATAAAGAGGAATAGTGAGCAATAATGAGGGATGTGTGAGCGTCTTTTTAAGTTTTATAACCTTTTTTGTTTTTGAAAATGCACACTTTTTTTTTGCTGTTAATCTGCAGACTTTTTTTTTTTTTCAGATTCAGTTCATTTTACATTTAAGATCTTTTTGTCTTTGAGGGTAATGTTTTAAGTTGTAAACCGATTTTAA

Function

symbol description
pld3 Predicted to enable catalytic activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in spinocerebellar ataxia 46. Orthologous to human PLD3 (phospholipase D family member 3).

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K16860 PLD3_4; phospholipase D3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_02112434_02123527.mRNA True 2416 mRNA 0.43 12 2112434 2124287

Neighbor

gene id symbol gene type direction distance location
CI01000028_02066861_02069575 FOXA3 coding upstream 42760 2066861 ~ 2069674 (+)
CI01000028_02058075_02059853 IRF2BP1 coding upstream 51406 2057901 ~ 2061028 (+)
CI01000028_02049119_02056683 SLC19A3B, SLC19A3 coding upstream 55352 2049119 ~ 2057082 (+)
CI01000028_01991288_02032906 SPHKAP coding upstream 78243 1991237 ~ 2034191 (+)
CI01000028_01854902_01867810 PID1 coding upstream 243934 1854902 ~ 1868500 (+)
CI01000028_02146358_02159174 NA coding downstream 22071 2146358 ~ 2159219 (+)
CI01000028_02165692_02171949 NA coding downstream 41405 2165692 ~ 2172944 (+)
CI01000028_02175774_02182966 KCNK6 coding downstream 51237 2175524 ~ 2183460 (+)
CI01000028_02211495_02287691 SPTBN4 coding downstream 87208 2211495 ~ 2288048 (+)
CI01000028_02299641_02304780 PCYT1A, PCYT1AB coding downstream 175115 2299402 ~ 2305061 (+)
G145494 NA non-coding upstream 24574 2087600 ~ 2087860 (+)
G145488 NA non-coding upstream 30304 2081760 ~ 2082130 (+)
G145487 NA non-coding upstream 31243 2080927 ~ 2081191 (+)
G145444 NA non-coding upstream 196261 1915576 ~ 1916173 (+)
G145420 NA non-coding upstream 230782 1881066 ~ 1881652 (+)
G145556 NA non-coding downstream 11317 2135604 ~ 2135908 (+)
G145544 NA non-coding downstream 61549 2185836 ~ 2188146 (+)
G145519 NA non-coding downstream 64778 2189065 ~ 2190747 (+)
G145515 NA non-coding downstream 67260 2191547 ~ 2195713 (+)
G145561 NA non-coding downstream 191506 2315793 ~ 2319340 (+)
CI01000028_00525538_00533862 NA other upstream 1590503 524647 ~ 535245 (+)
G145843 NA other downstream 898859 3023146 ~ 3024220 (+)
G147462 NA other downstream 2834416 4958703 ~ 4989838 (+)
G147636 NA other downstream 3091803 5216090 ~ 5216611 (+)
G147693 NA other downstream 3316167 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 5345605 7469543 ~ 7471432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013635 pld3 coding NC_007129.7 CM002902.2 46263169 ~ 46295132 (-)