G145487


Basic Information

Item Value
gene id G145487
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2080927 ~ 2081191 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU165308
GCTCGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAAAAGTGATTTATGTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGTGTCGTAACTTTGCAGATGTTGTTTATGTTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTGAAATCATAATCAACCACCCCTTTATGAGTGGAGGTTTCCCACTAGAACCTCTACTGAAGTAGCTCATCCCAAACAGAACAGAGTTTTACCTTTTTTCCTCTCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165308 True 265 lncRNA 0.38 1 2080927 2081191

Neighbor

gene id symbol gene type direction distance location
CI01000028_02066861_02069575 FOXA3 coding upstream 11253 2066861 ~ 2069674 (+)
CI01000028_02058075_02059853 IRF2BP1 coding upstream 19899 2057901 ~ 2061028 (+)
CI01000028_02049119_02056683 SLC19A3B, SLC19A3 coding upstream 23845 2049119 ~ 2057082 (+)
CI01000028_01991288_02032906 SPHKAP coding upstream 46736 1991237 ~ 2034191 (+)
CI01000028_01854902_01867810 PID1 coding upstream 212427 1854902 ~ 1868500 (+)
CI01000028_02112434_02123527 PLD3 coding downstream 31243 2112434 ~ 2124287 (+)
CI01000028_02146358_02159174 NA coding downstream 65167 2146358 ~ 2159219 (+)
CI01000028_02165692_02171949 NA coding downstream 84501 2165692 ~ 2172944 (+)
CI01000028_02175774_02182966 KCNK6 coding downstream 94333 2175524 ~ 2183460 (+)
CI01000028_02211495_02287691 SPTBN4 coding downstream 130304 2211495 ~ 2288048 (+)
G145444 NA non-coding upstream 164754 1915576 ~ 1916173 (+)
G145420 NA non-coding upstream 199275 1881066 ~ 1881652 (+)
G145418 NA non-coding upstream 242317 1838393 ~ 1838610 (+)
G145408 NA non-coding upstream 283459 1797190 ~ 1797468 (+)
G145353 NA non-coding upstream 389484 1610867 ~ 1691443 (+)
G145488 NA non-coding downstream 569 2081760 ~ 2082130 (+)
G145494 NA non-coding downstream 6409 2087600 ~ 2087860 (+)
G145556 NA non-coding downstream 54413 2135604 ~ 2135908 (+)
G145544 NA non-coding downstream 104645 2185836 ~ 2188146 (+)
G145519 NA non-coding downstream 107874 2189065 ~ 2190747 (+)
CI01000028_00525538_00533862 NA other upstream 1558996 524647 ~ 535245 (+)
G145843 NA other downstream 941955 3023146 ~ 3024220 (+)
G147462 NA other downstream 2877512 4958703 ~ 4989838 (+)
G147636 NA other downstream 3134899 5216090 ~ 5216611 (+)
G147693 NA other downstream 3359263 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 5388701 7469543 ~ 7471432 (+)

Expression


Co-expression Network