CI01000028_02049119_02056683 (SLC19A3B, SLC19A3)


Basic Information

Item Value
gene id CI01000028_02049119_02056683
gene name SLC19A3B, SLC19A3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2049119 ~ 2057082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_02049119_02056683.mRNA
GTAACAAACTACCTGTTTCCCATCTGGACATACTCATATCTGACCGTGCTCTGCCCAGTCTTCCTCCTGACAGATTTGCTTAGATACAAACCTTTAATTGTAGTTCAAGGCCTTTTTCTTGTCACAAATTATATAATTCTGTGCTTTGCTAACAGCTTGACCGCTCTGACCTACCTACAGTTCAACTTTGCAATGGTCACCTCCACCGAAGTGGCCTATTTTTCATATATCTACAGCGTCATACCTCCTGAACGCTACCAGCGAGCCACGGGGTACGTTCGCAGTGCCATGCTGACTGGCTATACATTTGGAGCCACATTAGGGCAGCTGTTAATATCATTAGCTGGCACAAGCTACTTCCATGTAAACACTATTACTCTGGGTCTAATGGCAGTGGCTTTCTGTGTTTCTTTGGTCCTGCCAATGCCTCAACAAGGAATGTTTTTTAAAAAGAAGGTGGAGGTGTCTACGCAGACACTGAACGAGGTTGCAGACTCATCCGGAGAAGGAATGGATCTAGCAAAGGAGGATACAGGAATATGCTGTGCTTGGGGAAACATTAAAACTTCCGGAAAACAAATGTGGAAGAGTCTCAAAGAATCCTACTCCTCCAAAACTCTGCTGCAGTGGTCCCTCTGGTGGGCTCTGGCTACAGCTGGATATGGACAGGTCTTCAACTACGTCCAGCTGATGTGGGACCACATTGAGCCCTCCAGTACGTCCTCTGTGTATAATGGTGGAGTGGAGGCCATCTGCACACTTGTAGGTGCAGCTGCAGCGTTCTCTGTGAGTTATATCAGAGTCCAGTGGGGGGTGTGGGGCGAGCTCTCTCTGGGTGTTTTCTCTGCCGTAGGTGCAGGGTGTGTCTTTCTCATGGGCCTCACTAACAATATCTGGCTGTGTTACGGAGGCTACGCTATCTTCAAAGCTTCGTACATGTTCCTCATCACAATCACAATGTTTCAGATCGCAGTTAACCTCTCTATGGAATGTTATGCTCTAACTTTTGGCATTAACACTTTTGTTGCCCTTACACTTCAAACTATACTTACTGCTGTTGTGGTGGACAATTCAGCCTTGGGACTGAAAATTACAACACAGTTTCTTGTATATGGAGGTTACTACAGCACCATCTCTGTGCTCTTCCTCACACAAGGGTTGTACACAGTTTGTAAGCATTACCGCAGGTCTGCAGCAGAAACAAACACAGACCAGCCTCCTCCTGCCATTCTGGAGCAGCAATCCGAATCAGACAGAAGTGGAAAACAGGATCTTCATCCACAGTCACCATCATAAAATATGATGGAACATTCAACACAATGAGTTTACAAAAAAAAAAGGGAAAAAAATCACAAGCCCATTGCTTTTTTGTCTTTTTTAATGTTGTTATTAGCCTAAACTAAAACTATACTGTAAGTGGTTGTGTATTGTATAATATGTATAACTATAGTAGTCAACATTTGAAGTGGATCAAAACCTTTCATCAAAGTTGTCCTAAAACCTTCTTTTTAGGACAACTTAGTTCTTAGGACAACTTTGATGAACGTTTTTGATCCACTTCAAATGTTGACTACTGTATTTATTCAACCAGTATATTTGCATAGACTGTTCTGTCCTGTCATTTCCTGTTTATAAATTAAAAAGAAGTGATTACTATTTGTTCTAAGCAAATATTAACCAAATGCTAACATTTTA

Function

symbol description
slc19a3b Predicted to enable vitamin transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to act upstream of or within vitamin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in biotin-responsive basal ganglia disease. Orthologous to human SLC19A3 (solute carrier family 19 member 3).
slc19a3 Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in thiamine transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Implicated in biotin-responsive basal ganglia disease.

NR:

description
Slc19a3 protein

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14610 SLC19A2_3, THTR; solute carrier family 19 (thiamine transporter), member 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_02049119_02056683.mRNA True 1695 mRNA 0.42 4 2049119 2057082

Neighbor

gene id symbol gene type direction distance location
CI01000028_01991288_02032906 SPHKAP coding upstream 14928 1991237 ~ 2034191 (+)
CI01000028_01854902_01867810 PID1 coding upstream 180619 1854902 ~ 1868500 (+)
CI01000028_01807411_01830472 DNER coding upstream 218379 1807411 ~ 1830740 (+)
CI01000028_01756600_01766746 NA coding upstream 282373 1756600 ~ 1766746 (+)
CI01000028_01716012_01751372 GRAMD1BB, GRAMD1B coding upstream 297086 1715085 ~ 1752033 (+)
CI01000028_02058075_02059853 IRF2BP1 coding downstream 819 2057901 ~ 2061028 (+)
CI01000028_02066861_02069575 FOXA3 coding downstream 9779 2066861 ~ 2069674 (+)
CI01000028_02112434_02123527 PLD3 coding downstream 55352 2112434 ~ 2124287 (+)
CI01000028_02146358_02159174 NA coding downstream 89276 2146358 ~ 2159219 (+)
CI01000028_02165692_02171949 NA coding downstream 108610 2165692 ~ 2172944 (+)
G145444 NA non-coding upstream 132946 1915576 ~ 1916173 (+)
G145420 NA non-coding upstream 167467 1881066 ~ 1881652 (+)
G145418 NA non-coding upstream 210509 1838393 ~ 1838610 (+)
G145408 NA non-coding upstream 251651 1797190 ~ 1797468 (+)
G145353 NA non-coding upstream 357676 1610867 ~ 1691443 (+)
G145487 NA non-coding downstream 23845 2080927 ~ 2081191 (+)
G145488 NA non-coding downstream 24678 2081760 ~ 2082130 (+)
G145494 NA non-coding downstream 30518 2087600 ~ 2087860 (+)
G145556 NA non-coding downstream 78522 2135604 ~ 2135908 (+)
G145544 NA non-coding downstream 128754 2185836 ~ 2188146 (+)
CI01000028_00525538_00533862 NA other upstream 1527188 524647 ~ 535245 (+)
G145843 NA other downstream 966064 3023146 ~ 3024220 (+)
G147462 NA other downstream 2901621 4958703 ~ 4989838 (+)
G147636 NA other downstream 3159008 5216090 ~ 5216611 (+)
G147693 NA other downstream 3383372 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 5412810 7469543 ~ 7471432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location