CI01000028_01807411_01830472 (DNER)


Basic Information

Item Value
gene id CI01000028_01807411_01830472
gene name DNER
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 1807411 ~ 1830740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_01807411_01830472.mRNA
ATGTGCAGAGGAAGTAATGTAGTGCACTTCAGATGTGCCTCAGTGATTGCCAATCCATGCGCCAGCAGCCCCTGTCTCCATGGCAACTGTAGTCAGGACGGCGAGGGGGATGGGTTTGCGTGCGAGTGTAGCGAGGGTTACAGTGGTGTCCACTGTGACCTGCCAACCTTGACCTTTGACCTCTCCGAGTCCACCTGGGACCTCGCCGAGAGCCTTGTAGCAGAACACGCCACGCCGGCCACTCCGGCCACACCTGCGACCACCACTCAAGTGTTTCAGCCAACCACAGTCCCCACCACTACTCAAGCTCCGCCCACCCTGGAGCCATGGAAACCCAAACCAGGTCAAAAAGTGGCGGAGATACTGTGGGAGGATCAGCAGATTACTGATGAAGCTGAATGTGTGAGTACCGCAGGAGGCGAGTCTGCCGGAATGATGACCGTTTCCATGGAGGTCGCCGAGGAAACAGCTGTGAAGGTGGTGGGTAACGTGAGCGGCTCTGCTGTACTGTGGCGTGTAGGTGAGGCTGGTTATGAGCAGTGCTCTGTTGCAGACGGCACAATCATGTGGTTCCAGCAGAGCTCAGATGGCCTGGTGCTGCCAGACCAGTCCCTGCCGTTCGGACACAACTACTTCATCAGTGTGCTGCACGTTGGTGCACCCTCTGGTCCAGAAGTTACTTTAAGGCTGCATCTCATGGTAAAAACCAATAACTGTATTGAGCCCGGCAGTGGATTCAGTGACCCACAATGCTCTGGGAAAGGGAAATGCATCACCCAGTCTTCTGTGGACACATTTTACTGCCAGTGTGATGATGGGTATTCTGGGATCTTCTGTGAGGAGTTTGACGCATGTCACCTGAAGCCCTGCGAGAACAATGGCACCTGTGCTGACCTCAGACAGAGAGATGAAGGACAAAACTACAGCTGCACCTGCCAGACAGGGTATCAGGGCGCCATGTGCGAGCAGAAGATTGATCCCTGTGCTTCCGGGCCCTGCCACAATAACGCCAGCTGCTCCCCACAGGGCTCTGGTTTAGGCTACACTTGCACCTGTCCTGCAGGTTTCACCGGACCCACCTGTGCCCAGCTGGTGGACTTCTGCGCCCTCAACCCATGCGCTCATGGCATCTGCCGCAGCGTCGGTACTAGTTATAGGTGCCTGTGTGTACCAGGTTATCATGGTCTGTACTGTGAGGAGGAGTATAATGAATGCTTGTCTGCTCCCTGTCAAAACTACGCCACGTGCAGAGACCTGATCAATGCCTACGAGTGCATCTGCGCCCCACAGTTCACAGGTAAGCACTGTGAGATATATAAAGACCCCTGTCTGAAGCTCAGGTGCCAGAATGGAGGACATTGTGAAAGTGGAGGGAGGAACGCATCCTGTCTGTGTCCACCAGGATATATGGGTGAGAACTGTGAAGTTGACGTCAACGAGTGTGAGAGTAACCCCTGTCACCATGGCGGCACCTGCATCGACCAATCAAATGGCTACACCTGTCACTGTCCTCCCGGCTGGGTCGGCGGAAGCTGTGAGATCCATCTGCAGTGGAAGATGGCTCAGCCTGTGGATTCACTGACCAACATGCCTCGTCACTCTCTGTACATAATTATCGGAGCTCTGTGCGTCGCTTTTGTCTTGATGCTCATCATTCTGATCGTTGGCATCTGTCGTATCAGCCGTATTGAATACCAGGGCTCGTCCCGTCACGCCTACCAGGAGTTTTACAACTGCCGCAGTATTGACAGCGATTTCAGCAACGCTATCGCCTCCATTCGCCACGCAAGGTTTGGGAAGAAATCTAGACCTGCGATGTATGATGCGACTCCCATCAGTTATGAAGATTACAGCCCTGATGACAAGCCTCTAGTTGCACTCATTAAAACTAAAGATTTGTGAGGCAATACATCTTCTGCACAAACACACACACCGCATACACACAGCCACTGTTCCAGCCTTTAAAATGAGCCAATCCGTTCAGTATTTATTTCCAGAGAACAGGTTTAAAAAATGAAAAAATCTTTTGAAATTGATATATTTTACCATTGCAAACCATGAAGCTTTTAATTCATATCAGGCACAAGGGGTGCTGCACAGAATTAGTTTAATGGAATGGTTCCAAACAAATGTACTTTGTTTGCGGACGCAAATGTTTCATGGAATATGA

Function

symbol description
dner Predicted to enable calcium ion binding activity. Acts upstream of or within glial cell differentiation; negative regulation of glial cell proliferation; and negative regulation of neural precursor cell proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in immature eye; nervous system; neural keel; and proneural cluster. Orthologous to human DNER (delta/notch like EGF repeat containing).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_01807411_01830472.mRNA True 2170 mRNA 0.52 12 1807411 1830740

Neighbor

gene id symbol gene type direction distance location
CI01000028_01756600_01766746 NA coding upstream 40665 1756600 ~ 1766746 (+)
CI01000028_01716012_01751372 GRAMD1BB, GRAMD1B coding upstream 55378 1715085 ~ 1752033 (+)
CI01000028_01658857_01673939 NA coding upstream 133344 1658696 ~ 1674067 (+)
CI01000028_01558674_01575492 CLMP, CLMPB coding upstream 231805 1558674 ~ 1575606 (+)
CI01000028_01507427_01522135 NA coding upstream 284182 1496380 ~ 1528547 (+)
CI01000028_01854902_01867810 PID1 coding downstream 24162 1854902 ~ 1868500 (+)
CI01000028_01991288_02032906 SPHKAP coding downstream 160497 1991237 ~ 2034191 (+)
CI01000028_02049119_02056683 SLC19A3B, SLC19A3 coding downstream 218379 2049119 ~ 2057082 (+)
CI01000028_02058075_02059853 IRF2BP1 coding downstream 227161 2057901 ~ 2061028 (+)
CI01000028_02066861_02069575 FOXA3 coding downstream 236121 2066861 ~ 2069674 (+)
G145408 NA non-coding upstream 9943 1797190 ~ 1797468 (+)
G145353 NA non-coding upstream 115968 1610867 ~ 1691443 (+)
G145352 NA non-coding upstream 219688 1577988 ~ 1587723 (+)
G145358 NA non-coding upstream 229511 1577632 ~ 1577900 (+)
G145418 NA non-coding downstream 7653 1838393 ~ 1838610 (+)
G145420 NA non-coding downstream 50326 1881066 ~ 1881652 (+)
G145444 NA non-coding downstream 84836 1915576 ~ 1916173 (+)
G145487 NA non-coding downstream 250187 2080927 ~ 2081191 (+)
G145488 NA non-coding downstream 251020 2081760 ~ 2082130 (+)
CI01000028_00525538_00533862 NA other upstream 1285480 524647 ~ 535245 (+)
G145843 NA other downstream 1192406 3023146 ~ 3024220 (+)
G147462 NA other downstream 3127963 4958703 ~ 4989838 (+)
G147636 NA other downstream 3385350 5216090 ~ 5216611 (+)
G147693 NA other downstream 3609714 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 5639152 7469543 ~ 7471432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013642 dner coding NC_007129.7 CM002902.2 46699731 ~ 46763170 (-)