CI01000028_02058075_02059853 (IRF2BP1)


Basic Information

Item Value
gene id CI01000028_02058075_02059853
gene name IRF2BP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2057901 ~ 2061028 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_02058075_02059853.mRNA
GTATATAGTCGTCCGTAACGAGGAAATAGTCGATCGCAAACGCTCGGAGGCTGACTGTGAAAGAGATTCAGGGTGGATTTGAGAACGCAAGATCGCGAGGGCCTATCAAATATGTCCTCTTCCTCGCAGGCATCTTCCAGGCGGCAATGGTGCTACCTTTGCGACCTGCCAAAGATGCCTTGGGCCATGATTTGGGACTTCAGCGAGGCCGTGTGCAGAGGCTGTGTGAACTACGAGGGCGCGGACAGAATAGAGTTGCTCATCGACACGGCGCGGCAGCTCAAGCGAACACACGTGATGCAGGACGGCAGATCTCCGGGTCCGCAGCCTGGCGGTAAACACGGTCCCGCTGGTAAGGAGGGTCCTATGGAGGCCGGCAGACCGCCCTCCGAGCGATATGAACGGGGAAGGGGAGAGTATGGGTCCAGCAGGCTGCCCAACGGGCTGCCTAGACTGGAAGATGGAGGTCCGCCTGAGGTGAGTAGGCAGAGTCCTACTGCCAGGAGGACTTTGGTGGGGGCTGTGCCACCCAATTTAATGGCGCAGGGGCTTGTCGGAGCCCCTCATGGTCTGCTGACCGCCATGCCTGGTCTGAATGCCCGAGCCGGAGGTGCCCCCTTGACCATTTCTGCTCCCATGTTGAACGAGATCAGTAAAAGACAGGCCCTGGGCATGGGGATGAATGTGGGTGTGGCTTCTTTCATGAGCCCTGAGTTTGAAAAGGAGCTCAAGGAGAAGCAGAGGAATGCTGAAGCACTCACCGAGCTCTCCGAAAGTGTAAGGAACCGCGCGGATGATTGGGCGGGACGGCCCAAACACATGCGCGAGGCCCTGCACACCCTTTCTGGCTGCACCCCGTTCAATGTCCGCTTTAAGAAGGACCACGGCCTGGTGGGGAGGGTGTTCGCCTTTGACGTCAAGCTGATGGTTGAGTTTGAGCTGAAGGTGTTCGTCGAGTACCCGTGCGGGTCTGGTAACGTGTTCTCCAGCGTGTTAGCGCTAGTCAAACAGATGTTCCACGACTCTCAGAAAGACACTGGCAAGGTCATCAACTCCGGCTACAAATACGTGGAGTATGAGAAGAGGCATGGCACCGGCGACTGGCGTCTCCTGTCAGAGCTTCTCAGCGATGCAGTGCGGGCGTTCAAAGACGCACCGGCCCCGGATGCCCTCCCACAGCCGTACCTGGATGCCAGCTGCTCCATGTTGCCCACCGCGCTCTGCCACATCGGCCGTCCCACGCAGCCCAGAGTACGCAGACGCAAAGCCTCGCCCGAGCCGGAAGGCACCGAGAGGATGACCTCAGAGGAAATGCGCCAGCACTGGTCCCTCGGTGTGTACCCTGGCATTCCCGGCCATATGCCCGCCACCTCGCTAGCCAGCGCAGGACAGCCACCGGAGGCCCACAGTAGTGACCCTTCGCCCATCACTGCGCTCATGAGCGTGGCTGACAACGTCGGCACTGCCACCCCTAAAGATGCTCCCGGCGGCAGCGGAAGCCACTCGGCGAACGCAGGCCGTCAGAACAGCACCAGTCCTTCGCCCGGCGGTCAGCGGCGGCTGGCGTCACGCAACGGAGAACCATCGGCTGGCAGTAGCTCGGGAGGGCCGACCACGACCGTCACCGTGCCCCTCTCTGACCAGGGCGCCGTTATGGGAGCCGAAGGCTCAGGAGGAGCCGCAGGCGGCGGCGCCCCTCTCTGCTGCACCATCTGTCACGAGCGCCTAGAGGACACACACTTCGTCCAGTGTCCATCTGTGCCCGGGCACAAGTTCTGCTTCCCTTGCACCCGAGACTTCATCCGCAGACAGGGCTCAGGAAGTGAAGTGTACTGCCCCAGCGGGGAGAAGTGCCCCCTCGTGGGCTCCAACGTGCCGTGGGCCTTCATGCAAGGCGAGATCTCTACAATCCTGGCAGGTGATGTGAAGGTGAAGAAGGAAAGAGACCCCTAACGGCCAGCAGCAGGTTAGAAAACATGCATAATTCAGAAAGGATGCATTAAATTGATCAAATGTGACAGTAAAAACATTTATAATGTTACAAAAGATTTGTTTCAAATAAATGTCGTTCTTTTGAACTTTCTATTCAGCAAAGAATCCTGAAAAATGGTTTTCACAAAAATACACTGCAAAAAATGCTTTTCTTACTTCGTATTTTTGTCTTGTTTCCAGTCCAAATATCTAAATATTCTTAAATCCAGATGCTTTACTAGATAAGTAAAATGACATTTTTTTTTTTTTCTTGTTTTCTGGGGGAAAAAAATCAAAATGAAGGGAGTTTTTGCTGAAAACAAGGACAATTATCTGCCAGTGGGGTAAGAAAAATAAGCTTGTTTCTGTTTGGGACAGAAACAAGAATTCAAACAGAAACAAGATTATTTTTCTTACCCCATTGGCAGATAATTTTGCTTGTTTTAAGCAAAAACTCGCTTCATTTTGATTTTTTTTTTTTTTTTTTCCAGAAAACAAGAAAAAATATCTTAATATCAACATTTTTAGATATTTGGACTGGAAACGAGACAAAAATGCTAAATAAAAGCATTTTTTGCAGTGTATTAAGCAGCACAACTGTTTTCAACATTGATGATGATAATAAAATTTTCTTGAGCAGTAAATCATTATACTAGAATGATTTCTGAAGGATCATGTGACACCAAAGACTGGAGTAATGATTCAGGAATAAATTGCATTTTACAATATTTTCCAGCAGAAAAGAGTTATTTTAAATTGTAATAAAAATTCACAATATTACTGTTTTTTACTGTATTTTTGATCAAATAAATGCAGCTTTGATTTCAAAAACATTACATTGTACCAACCCCAAACTTTTGAGTGTGTGTATATTATTTATAATATATGTTAACATGTATTTTAATGCCTCCCTAACAGAACTACACCTCACTCTGAGGGAGCTGCGATCCTGAGCCCTAAAGATGGCCGCTGTGATCGTGTGACCCACGGCACTGAAGAGACGACTGCTGGTGGGCAGATCCTCTTCCTCCATCTAACCAGGCCCCCTCTTGCCCTTCACTGTCTTTCCCCCCCTCATTTTCCTTCCCTTCACCGTCTCTCTTTCAGCCAAGACGAAGGAGAACACAGCCATTTTTCTCTTCAGAGATGCCCATGTA

Function

symbol description
irf2bp1 Predicted to enable transcription corepressor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human IRF2BP1 (interferon regulatory factor 2 binding protein 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_02058075_02059853.mRNA True 3128 mRNA 0.51 1 2057901 2061028

Neighbor

gene id symbol gene type direction distance location
CI01000028_02049119_02056683 SLC19A3B, SLC19A3 coding upstream 819 2049119 ~ 2057082 (+)
CI01000028_01991288_02032906 SPHKAP coding upstream 23710 1991237 ~ 2034191 (+)
CI01000028_01854902_01867810 PID1 coding upstream 189401 1854902 ~ 1868500 (+)
CI01000028_01807411_01830472 DNER coding upstream 227161 1807411 ~ 1830740 (+)
CI01000028_01756600_01766746 NA coding upstream 291155 1756600 ~ 1766746 (+)
CI01000028_02066861_02069575 FOXA3 coding downstream 5833 2066861 ~ 2069674 (+)
CI01000028_02112434_02123527 PLD3 coding downstream 51406 2112434 ~ 2124287 (+)
CI01000028_02146358_02159174 NA coding downstream 85330 2146358 ~ 2159219 (+)
CI01000028_02165692_02171949 NA coding downstream 104664 2165692 ~ 2172944 (+)
CI01000028_02175774_02182966 KCNK6 coding downstream 114496 2175524 ~ 2183460 (+)
G145444 NA non-coding upstream 141728 1915576 ~ 1916173 (+)
G145420 NA non-coding upstream 176249 1881066 ~ 1881652 (+)
G145418 NA non-coding upstream 219291 1838393 ~ 1838610 (+)
G145408 NA non-coding upstream 260433 1797190 ~ 1797468 (+)
G145353 NA non-coding upstream 366458 1610867 ~ 1691443 (+)
G145487 NA non-coding downstream 19899 2080927 ~ 2081191 (+)
G145488 NA non-coding downstream 20732 2081760 ~ 2082130 (+)
G145494 NA non-coding downstream 26572 2087600 ~ 2087860 (+)
G145556 NA non-coding downstream 74576 2135604 ~ 2135908 (+)
G145544 NA non-coding downstream 124808 2185836 ~ 2188146 (+)
CI01000028_00525538_00533862 NA other upstream 1535970 524647 ~ 535245 (+)
G145843 NA other downstream 962118 3023146 ~ 3024220 (+)
G147462 NA other downstream 2897675 4958703 ~ 4989838 (+)
G147636 NA other downstream 3155062 5216090 ~ 5216611 (+)
G147693 NA other downstream 3379426 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 5408864 7469543 ~ 7471432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013637 irf2bp1 coding NC_007129.7 CM002902.2 46361544 ~ 46369516 (-)