CI01000028_06079297_06089526 (SEMA6D, SEMA6DL)


Basic Information

Item Value
gene id CI01000028_06079297_06089526
gene name SEMA6D, SEMA6DL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 6079192 ~ 6089686 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_06079297_06089526.mRNA
ATACACAAGAGGGAATCGTGCCTGGGATGTATGTTGACGTCTGTATGTCTGTGTGTTTCAGGTAACATCTACATAAGTGCAGTACAGGAGGAGTTTGCCCTCTGTGCCAGCGATGGGGTGGCGAGAACTGACGACTGACCTGCTGCTGCTGCTGCTGCTGATGGCGTCCCACCTGGAGGCCGTGAGCTTTCCTGAGGACAACATCCCTTTAGATGTTGTGGACAGACACTATGCACGACAGTACCCGGTTTTCCGTGGACGCCCCTCTGGCAACGAATCTCAGCATAGACTGGACTTTCAGCTGATGACCCAGATACATGATACACTCTTCATCGCGGGCAGGGACCAGGTGTATTTAGTGAGTCTAAGAGAGTCCTACAGGAATGAGATCATTCCATACAGGAAGCTGACATGGCGGTCGGGGCAGGCGGACAGGGAGACATGTGCCATGAAGGGAAAGCACAGAGACGAGTGCCATAATTTCATTAAAGTCCTGGTTCCGAGAAATGATGATCTTGTGTTCATCTGTGGAACAAATGGTTTCAACCCCATGTGCCGTTACTACAGGTTGGATAACCTGGAGTTTGATGGGGAAGAGATCAGCGGTTTGGCCCGATGCCCATTTGACGCCAAGCAGACAAACGTTGCCCTGTTTGCTGACGGTAAGCTGTACTCGGCTACGGTGGCGGACTTCCTGGCCAGCGATGCTGTGATTTATCGCAGCATGGGAGACGGTTCTGCCCTTCGCACCATCAAGTATGACTCCAAGTGGTTAAAAGAACCACATTTCCTTCACGCCGTGGATTACGGGGATTTCGTCTACTTCTTTTTCAGAGAAATCGCAGCCGAGCACAACAACTTAGGAAAGGCGGTTTACTCCAGAGTTGCTCGGATCTGTAAAAATGACATGGGAGGGTCTCAGCGGGTAAAGCTTGTCGCAATCCTTTCCACAATATCTCCAAATGAAAACAGGCTGAATAGCTCTAACAACACTGTTTCCGATTTATTCAGTATCCCTGGATCCGCAGTGTGTGCATTCTCCATGGCGGACATTGAGAAAGCGTTCCGTGGCCGTTTCAAAGAGCAGAAGACAGCAGATTCAGTGTGGACACCATTTCCAGAGGAAAAGCTGCCCAAGCCCAGACCCGGCTGCTGTGCAGGACACGGTTCAGCGGAGTCCTACAAAACCTCCATCGAGTTTCCAGACGAGACCCTTCAGTTCATCAAGTCACACCCACTCATGGACGCCTCAGTCCCCTCCATTGGAGATGAACCGTGGTTCACCAAAACAAGAGTCAGGTATAGGCTAACGGCACTCGCCGTTGATAACACTGCAGGACCCCATAAGAATTACACAGTGGTTTTCATTGGCTCTGAGGCAGGCATCGTGCTAAAAGTTCTGGCCAAGACATCCCCGCTGTCTTTAAATGACAGCGTCCTACTGGAGGAGATTGATGTTTTCAACCAAGCCAAGTGTTTATCCAGCAATGAGGATGATCGGCGAGTTCTGTCTTTCCACCTAGATAAAGACACCCACACGCTATATGTGGCCTTTTCCAGCTGTGTGGTCAGAATACCACTCAGCCGCTGCGAACGACACAGTTCCTGTCAAAAGTCTTGTATTGCTTCTAGAGACCCGTACTGCGGGTGGATGTCACATGGAGCTTGTGAGCGTATTCCTGCAGCTATGCAAAATGGTTATGAGCAAGATGTTGAATACGGCAACACAGCTCATCTCGGCGATTGTCATGAATTTTTGGCCACTACATCAGCGCCAGATTTCAAATCATATGGCGACCCAACCTCTGACATGGAGTTGCCATCTTCGTCAGTCACAGTGCCCGCGACCTCTGAACCCATACAATCACCCCAAACCATCCCCACTCAGATTCCCCAACTCTTTGGCTCACGGAAATTTGTGCTCCACGATGACCCAGCCACTTCACATTCTGTTGAGCATATACCAGGTGTGCTGGAGGGTGTGTGGGAAATACAAGCAGGTGAATCTAACCAGATGGTGCACATGAACATCCTTATCTCCTGTGTGTTAGCTGCATTCCTGCTTGGTGCATTCATCGCCGGCATGGTCGTTTACTGCTATAGAGACGCTTTCCTTCGCACTCCACGCAAGATCCAAAAAGACGCAGAGTCAGCACAGTCCTGCACTGATTCTACTGGCAGCTTTGCCAAGCTCAACGGTCTGTTCGACAGTCCTGTCAAAGAGTACCAACCCAATATGGATTCTCCCAAACTGTACACCAACCTGTTGAGCAATGGGAGGGAGGTGCCAACCACCGGAGACACTAAGACGATGCTCCTGAGCGGGCAGCCACCGGAACTAGCAGCACTGCCTACGCCCGAGTCCACACCTGTGTTGCAACAGAAGAGCCTTCAGCCAATCAAGAACCAGTGGGAGAGAGCTCATGGAAAGATAAGTAGTTCCCGCAAAGATGGACCACCCAAAAGCCCGCAATTCCTTCCCTCCAGTCCACCTCCCCATTCTGCCATTAGCAACCCCCACATCCCTAGTGCTGTGGTACTGCCCAATGCTACACATGATAACAGGGCATCCTTCAGCACTCCTGAAGGGCCTCAAGCAGAAAAGAAGATCCAGAATAGCGATCAACATGGTTCCAAATCTGGCCGTAAAGACCAGCGGCGCACTGTGGATGCCAGGAACACGCTGAACGACCTCTTAAAGCACCTGAATGAGAGCAACCCAAAGGCCATCATGGTGGAGATGCCGAAATCCCGACAGCACCTAATGCTGGAACCCATTGTAAGCCCAACGGAGATTCCACCTAAAGTCCCAAGCCGAGAGGCCTCCTTGTACTCTCCCTCTTCATCTTTACCCAGGAATAGCCCGACTAAAAGACTGGATGTGCCGACTACACCAACATCACCCACAGGGCAGATGGGAACTCTCGAGAGACAGCGATACCACCGCAGCTCTTCCCAGCGGCACTCCATATCCTCGCCGCCCAAAGGGCTGCACTCACCTAGCGGGGCCATAGTGTCCCGGCAACCTAGTATGAACAGAGGTGGGTACATGCCCCCAACTCCTACCCCACCCACTAGACTAGACTCTCATGGGGTACCAATGGCTATGACACCTTCTGTATCCCGACAGAGCAGCTACAGTGGTCACGGATCTTTACCACGAACATCCGTCAAACGGACAGCATCGTTAAAGCCCGATGTGCCACCCAAACCCAACGGTTTTGCACCACAGACTGCACAAATGAGGGCAGTGAACAAGTATAGCTACTGAAATGCTTAGCAAGATCTTACTCTTTGAATGGACAGTGAGAGTAAAAGTGCTTGGCCCGCAGAAATATGGCATGCCAGTCTCCATTTCCTTTGAAAGGAAATTAAA

Function

symbol description
sema6dl Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cranial ganglion; head; midbrain neural keel; and midbrain neural tube. Orthologous to human SEMA6D (semaphorin 6D).
sema6d Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in retina. Orthologous to several human genes including SEMA6C (semaphorin 6C).

GO:

id name namespace
GO:0030335 positive regulation of cell migration biological_process

KEGG:

id description
K06842 SEMA6; semaphorin 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_06079297_06089526.mRNA True 3376 mRNA 0.51 18 6079192 6089686

Neighbor

gene id symbol gene type direction distance location
CI01000028_06025232_06034863 NA coding downstream 44297 6024412 ~ 6034895 (-)
CI01000028_05991041_05996372 NA coding downstream 82820 5990915 ~ 5996372 (-)
CI01000028_05958646_05968274 VWA7 coding downstream 110440 5958334 ~ 5968752 (-)
CI01000028_05937526_05949610 NA coding downstream 129582 5936918 ~ 5949610 (-)
CI01000028_05921980_05932828 NA coding downstream 146316 5921412 ~ 5932876 (-)
CI01000028_06092667_06094044 NA coding upstream 2502 6092188 ~ 6094595 (-)
CI01000028_06199637_06208451 NA coding upstream 109015 6198701 ~ 6208993 (-)
CI01000028_06565728_06571617 GLDN coding upstream 475021 6564707 ~ 6572022 (-)
CI01000028_06681287_06690095 ACADL.L, ACADL coding upstream 591482 6681168 ~ 6690168 (-)
CI01000028_06736522_06738241 LYSMD2 coding upstream 646794 6736480 ~ 6738241 (-)
G148608 NA non-coding downstream 39577 6039404 ~ 6039615 (-)
G148589 NA non-coding downstream 41594 6037005 ~ 6037598 (-)
G148592 NA non-coding downstream 55393 6023385 ~ 6023799 (-)
G148607 NA non-coding downstream 59895 6019019 ~ 6019297 (-)
G148601 NA non-coding downstream 64110 6012681 ~ 6015082 (-)
G148629 NA non-coding upstream 68164 6157850 ~ 6158087 (-)
G148634 NA non-coding upstream 116638 6206324 ~ 6206648 (-)
G148638 NA non-coding upstream 124662 6214348 ~ 6214556 (-)
G148646 NA non-coding upstream 132928 6222614 ~ 6222917 (-)
G148652 NA non-coding upstream 144034 6233720 ~ 6234020 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 3632879 2441332 ~ 2445596 (-)
G146238 NA other downstream 3919154 2147378 ~ 2160038 (-)
G146190 NA other downstream 3967927 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 5603846 473609 ~ 475211 (-)
G144855 NA other downstream 5943316 135392 ~ 137202 (-)
G149329 NA other upstream 609827 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 881071 6965064 ~ 6984084 (-)
G149474 NA other upstream 1140105 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 1436276 7525962 ~ 7535743 (-)
G149923 NA other upstream 1884882 7974568 ~ 8024244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location