CI01000028_06565728_06571617 (GLDN)


Basic Information

Item Value
gene id CI01000028_06565728_06571617
gene name GLDN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 6564707 ~ 6572022 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_06565728_06571617.mRNA
ATAGTCTTCATAGAATTTGGAAAACTGTTTCAGGAAAGTGTTTACTGAAATCTTGCTGTGGCTCTCAGATTGTCTTCCACATCATTGGCTGTTGGTGTCGATGTGGATTATGCTGGTCAGCCCACGGTCATGCTGAAGAATGGACTCTACTGCATATAAATCAGGTGACTGCACAAGTGGGGGGTTCTTCTCCAGCGCATCAGGACGGCACAAATCCGAGCAGCCCTCAGTCGCACATAGACTCGACTGGAAACAAGGACTTCAATTGTCTTATCGCATCTTCTTTTTTAGGGGAATATTCTAGACTTTTATTATCCAGCCTTATTGTTGAAAGTGTTGATTTGTAGTAAATTTTGCTTTGCAGTTTTTGAACACTTTCTGAATTTGAATTCCTGAGAAGTCAGAATGCTGGATCCACTGGCAGAGTTGAGAAGAACCGGAGGATTTAGGCAATGTGGTGGCCGGTTGTCCTGGCAGATACGTTGGGTCTTGTACAGCGTGTGCGTACTGGCGGTAATAAACTGTGCCGGCCTGGTGCTGCTCCTGGTTCAGCAGAGAGAGCTGTGGGCTCATCTGACTGAGCTGGAGAGGCAGATGGTGGAGATATCTCAGAGCTCTGTGGTGGAGTTCATGACACAGGTGAACGAAGATGAGGCAGAGTATCAATACTCCAGAAACAAACGCAGACGGCAGCATCGAGGGACACGACCCTTAGAGGAGCATGAGGGGAGTGTGGGAGAGGAAGTCTTGGGAGATTTCCAGTATCATTATCAGCAGACGCATGGGCCGGTTTACCAGCACAAAACAGAAGAGCAGGATGGAATGATGATGATGATGACTTACTCCATGGTGCCAGTAAAGATTCTGCTGGACATTTGCAACAGTACTAAAGGAGTCTGTCTGACTGGGCCTCCAGGACCACCAGGAATTCCAGGCTTGCCGGGTGAGGACGGAATGCCGGGGTATAATGGAACAGATGGAATTCCAGGGTTGCCAGGAGAGCCTGGAGCACATGGAAAACGAGGAAAACGAGGTCCTCCTGGTGAGAAGGGTGAGTCTGGTGAGAAAGGAGAGCAAGGATATCCTGGACCCCCAGGACCTCCTGGAGAACCGGGCGAACCTTCAAATGATGTGATTGTAGAGGGTCCACCTGGTCCAATGGGTCCATCTGGTCCAATGGGACCCCCTGGCCTCCCAGGTCCTCCAGGTCCCCCCGGGCCTCAAGGGCCACCAAGACACAGGAGCCACAGAGCACATCTTCACATGGGGAAGGAATCTGTGGGTCACCTTAATTCAGTCCCAAATGATGATACCATCAGCCAGAAAATGGCATCATGGAAGATAAACGACTGTGTTATAAAGTCAGTGCAGAACCCTAGACATCTGATGAAAATGAGCAGCACGTTTGGTGCGTGGATGATGGACACTGCCGCTCATGACGATGAGAAGATTTGGGTAGCAGAACATTTCTCAGGTCGTATCATAAAGCAGTACAACAGTATCGCAGCGTTCCAGAACAGCAGCAGTGAATCCATTGATGTCCGGAAGTTTTTCCAAGGTTGTGGCCACGCTGTACATAACGGCTCCATATTCTACCACATCGCTGGAACGTTCAATATTGCTAAGTTTGACCTCCAGACCAAGATCTTACACATGCTGAGTATTGACAACGCCCTCTATCACAATCTGTCCTACCTCCTTCAAAACTCAAAGACGTATTTCAAATTGGCAGTTGACGAGAACGGTATGTGGATCATATTTGCCTCCAACATTGACGACAGCATCATGGTGGCGCGACTGGATGAGAAAACGTTCTCCGTCACCACCTACATCAACACCACATATCCCAGGACCAAGGCCGGTAATGCGTTTATCGCCTGCGGGATCCTCTACGTTACGGATACCAAAGACACAAAGGTGACGTATGCCTTTGACCTGCTGAAAGAGAAACCTGTTGGAGTCAGTTTAGATCTGAGGGCACCTGGAGGGCTTCTGTCCATGATCTCATACAATCCCAGAGACAAACATCTCTACATATGGGACAGCAGCTACGTCAAATCATACCAAGTTCAGTTCCTCTCAGATGAGTAATCAGAACTGAGGGTGTGTTCGCACTTTGCAGATTTGGTTCGATTAAAACGAACTCAAATGGTGCAATTGTTCTGTTAGTGTGGTTCATTTTAATAAGTGTGAACGCTGCCATCCGAACCCTATTGCACACCAAACAAGCAGACCGTGACTCCTGAAAAAGTGGGTTTCAATCTGCTTCCAAACGAACTCTGGTTCGACTGAAATATGAACGCAACACTCACCAAAGACATCTAAACAAACCTCAAAAAAAAAAGGACAGAATGCTCAAGGATATCTGGTTTTTCTCAGCATAGTTGTCCCATTACAGTTTGGTAGAACCGCCAGCTCCTTGGAACAGATCTTGTTTGTGTCTAACGGAGGAATTTCTGGTGCTGTTTTTACTCTTTTACATGTTTCATAAGTAGTTCTCAGCTGGTAAAATACCATCATATTTACGCATATACTGCACAACAAACACATTTAGCCCATCACACAGTTTTGGTTGTTCGGTAAGTTCATTCAGAAAATATACATCATAAAGGAACCAAGAGAACTAAACTACAAGTGTGAACACACCCATAATTGGAATACTTTGTGTTTTGTTTTGTCATGTTCATGTATATTTATAAGCAAATAATAACTAATGCTTCAGTTGTTACCCATACCATTCTAGTGATACCTGTAAGATGTTCATGTAAAGTATATGGACACTTAAGCCATGCTTAAATCTCAATATCACTGCATTAGACATCAAACCTGCAAACAATCTTGTAAAGTGAGCTTGCTTCTCTTTCTTTAAAATAAATGCCACTTGGTTTGATAACTGTTACCTAATGTAATGATATTCAGGCATTTTTTAACATGACTTGAGTATTCAAAAACATTTTGGGGCTACTATATTTATGTAATATTTGGTATAATGTTTCACTTTTAAATGTTGGATTTTCCTTCTTTTTGGCTAATATGCATTTTAAATTGAATGGTTACAAAAAGAAATTCATTCTCTTGTTACAAGAATGAAGCCAAATGTGTGTATAATAAA

Function

symbol description
gldn Predicted to act upstream of or within clustering of voltage-gated sodium channels. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome. Orthologous to human GLDN (gliomedin).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16364 GLDN; gliomedin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_06565728_06571617.mRNA True 3112 mRNA 0.44 10 6564707 6572022

Neighbor

gene id symbol gene type direction distance location
CI01000028_06199637_06208451 NA coding downstream 355714 6198701 ~ 6208993 (-)
CI01000028_06092667_06094044 NA coding downstream 470112 6092188 ~ 6094595 (-)
CI01000028_06079297_06089526 SEMA6D, SEMA6DL coding downstream 475021 6079192 ~ 6089686 (-)
CI01000028_06025232_06034863 NA coding downstream 529812 6024412 ~ 6034895 (-)
CI01000028_05991041_05996372 NA coding downstream 568335 5990915 ~ 5996372 (-)
CI01000028_06681287_06690095 ACADL.L, ACADL coding upstream 109146 6681168 ~ 6690168 (-)
CI01000028_06736522_06738241 LYSMD2 coding upstream 164458 6736480 ~ 6738241 (-)
CI01000028_06756364_06785862 TMOD3, TMOD2 coding upstream 184321 6756343 ~ 6788590 (-)
CI01000028_06930121_06933901 BCL2L10 coding upstream 357801 6929823 ~ 6934781 (-)
CI01000028_06937034_06956621 GNB5B coding upstream 364796 6936818 ~ 6956621 (-)
G149342 NA non-coding downstream 674 6563385 ~ 6564033 (-)
G149338 NA non-coding downstream 31794 6531184 ~ 6532913 (-)
G148768 NA non-coding downstream 158450 6406017 ~ 6406257 (-)
G148766 NA non-coding downstream 159862 6404624 ~ 6404845 (-)
G148748 NA non-coding downstream 188007 6376359 ~ 6376700 (-)
G149384 NA non-coding upstream 31944 6603966 ~ 6604185 (-)
G149405 NA non-coding upstream 87036 6659058 ~ 6659737 (-)
G149411 NA non-coding upstream 119375 6691397 ~ 6691607 (-)
G149414 NA non-coding upstream 122863 6694885 ~ 6695129 (-)
G149415 NA non-coding upstream 123818 6695840 ~ 6696043 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 4118394 2441332 ~ 2445596 (-)
G146238 NA other downstream 4404669 2147378 ~ 2160038 (-)
G146190 NA other downstream 4453442 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 6089361 473609 ~ 475211 (-)
G144855 NA other downstream 6428831 135392 ~ 137202 (-)
G149329 NA other upstream 127491 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 398735 6965064 ~ 6984084 (-)
G149474 NA other upstream 657769 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 953940 7525962 ~ 7535743 (-)
G149923 NA other upstream 1402546 7974568 ~ 8024244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location