CI01000028_06736522_06738241 (LYSMD2)


Basic Information

Item Value
gene id CI01000028_06736522_06738241
gene name LYSMD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 6736480 ~ 6738241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_06736522_06738241.mRNA
ATGGCGGAGTTTTCTCCGGTGCTGCCTCCGTTGCGGGATGATGGAGGAGGCGGGCGGTATGGACAGCCGCTGTTCCCCAGATCACGGTCCGGTTCGGAGTCGGACAGTGAATTATCGCAGAGTTTGGCCCGCACAAAGACGCGCTCGTACGGCAGCACCGCAAGCGTCACGGCGCCGTTAGGAGAAACATACATAGAGCACCGGGTAACGGACGGGGATACACTGCAGGGTATAGCGCTCAAATATGGTGTTACGATGGAGCAAATTAAACGAGTCAATAAACTATTCAGCAATGACTGTATATTCCTGCGAAACACTCTCAATATTCCTGTTAAGTCCGAAAAACGTTCCCTCTTTAACGGACTGTCTCTGGAGTCACCTGACAGTGAGGGAACCACACTGCTGGAGTCGCCGTGTGTGAGTCAGGATGTGGACATCCCATCACCCCCACCAGAACCGGCCATCCCGGAGCCCAACACCCGACCCGTGCAGGCAGAAGAGCTGTCTGCTAAAGACTACTTACATCGACTGGACTTGCAGATCAAGCAGTCCAAACAAGCCGCCCGCAAACTGAAAGAGGATGGTGGGAGGTAAATGAACCCTTGACCTGCATGAGCGTTTCTCTGCTTTATTAAA

Function

symbol description
lysmd2 Is expressed in central nervous system; hypophysis; notochord; and pancreas primordium. Orthologous to human LYSMD2 (LysM domain containing 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_06736522_06738241.mRNA True 636 mRNA 0.53 2 6736480 6738241

Neighbor

gene id symbol gene type direction distance location
CI01000028_06681287_06690095 ACADL.L, ACADL coding downstream 46312 6681168 ~ 6690168 (-)
CI01000028_06565728_06571617 GLDN coding downstream 164458 6564707 ~ 6572022 (-)
CI01000028_06199637_06208451 NA coding downstream 527487 6198701 ~ 6208993 (-)
CI01000028_06092667_06094044 NA coding downstream 641885 6092188 ~ 6094595 (-)
CI01000028_06079297_06089526 SEMA6D, SEMA6DL coding downstream 646794 6079192 ~ 6089686 (-)
CI01000028_06756364_06785862 TMOD3, TMOD2 coding upstream 18102 6756343 ~ 6788590 (-)
CI01000028_06930121_06933901 BCL2L10 coding upstream 191582 6929823 ~ 6934781 (-)
CI01000028_06937034_06956621 GNB5B coding upstream 198577 6936818 ~ 6956621 (-)
CI01000028_06969947_06983352 NA coding upstream 230108 6965064 ~ 6984084 (-)
CI01000028_07010842_07012858 NA coding upstream 271582 7009823 ~ 7012858 (-)
G149428 NA non-coding downstream 7998 6728248 ~ 6728482 (-)
G149426 NA non-coding downstream 10186 6726032 ~ 6726294 (-)
G149415 NA non-coding downstream 40437 6695840 ~ 6696043 (-)
G149414 NA non-coding downstream 41351 6694885 ~ 6695129 (-)
G149411 NA non-coding downstream 44873 6691397 ~ 6691607 (-)
G149429 NA non-coding upstream 3142 6741383 ~ 6741582 (-)
G149328 NA non-coding upstream 16098 6754339 ~ 6755285 (-)
G149331 NA non-coding upstream 58347 6796588 ~ 6798393 (-)
G149451 NA non-coding upstream 79936 6818177 ~ 6818415 (-)
G149456 NA non-coding upstream 90046 6828287 ~ 6828493 (-)
G149329 NA other downstream 35240 6699513 ~ 6701240 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 4290167 2441332 ~ 2445596 (-)
G146238 NA other downstream 4576442 2147378 ~ 2160038 (-)
G146190 NA other downstream 4625215 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 6261134 473609 ~ 475211 (-)
G149474 NA other upstream 491550 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 787721 7525962 ~ 7535743 (-)
G149923 NA other upstream 1236327 7974568 ~ 8024244 (-)
G150328 NA other upstream 1955157 8693398 ~ 8693743 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012982 lysmd2 coding NC_007129.7 CM002902.2 39416357 ~ 39430956 (+)