G149328


Basic Information

Item Value
gene id G149328
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 6754339 ~ 6755285 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU169612
GAAACTCATACAGGTTTGGAACAACATGAGGGTGAGTAAATTCATTTTAATTTTTGAGTGAACTGTCCCTTTAAATAGCAAACAATTCTGGGAGCATTTAGTTGTCCCGGTGCAGCTAGAGCCCAGAACATACACACATGCATGTTTGTGATCGCATGCATGTTTGCAATGTAAAGCAAAGCTTTATCTTTTCACTAAAGCGATCTAACATGCTTTCAAAATAACAGTGTAAAAATACCGAATTAACCTTTATACTGCTTGTCATCTTTTGTGAGCTTGTACTTCTTACAAGGTTCATTGATTGTGGTATATGTTGTACAGCACAGACGATTTGGCAGGATTTTGTGGAAGGTGGTGAATGGACCTTTAGTACAAAAGTATGGCATCTCGGACTGAGCAGTCTGAGCATGGCCAGTATGGATTATATAGCTGGATTACAAAGGGGAACATGTTTTTTTTAAAAGCAAAAGCTAGGACCAAGTTTGAAGTTTTCCTTTTCTCAACATTGACATTGTGTTTTATTGTTTTGTACTGTTCTGTTTTGTAAGAGCCTTGTGTATCAATTGACTTTGAGTTTGTTTGTCCGTTATTTTCCTTTTTGAACAAATGCTGAATTGTGTGTATGAAATTGTAGTTTTTTTCCAGGTTAGGGTTTGTTTCATTCCATCTTTGTTTGATTATGGGTTAAAGGTTCATTACTTTGCTAAAAGCTTATGCTTGTAAGAAGGAGCTCTGCAGTCTTACCGTGAGTTTATTTGAAATATCCATCTCAAATCCTCTTCAGAAGACTCCACACATATAAAGGTATACATATAAATATCATGTATCGTAAATGCCTCATATATTGCCGCAATTTTGTATGTTGATACTACATGTCTGGATTCCAGAAGAGGAAATCTTATTATGTACTGTTAATAACACAACTGTGTAAAGTATCAGACGTCCTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106579430

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169612 True 947 lncRNA 0.36 1 6754339 6755285

Neighbor

gene id symbol gene type direction distance location
CI01000028_06736522_06738241 LYSMD2 coding downstream 16098 6736480 ~ 6738241 (-)
CI01000028_06681287_06690095 ACADL.L, ACADL coding downstream 64171 6681168 ~ 6690168 (-)
CI01000028_06565728_06571617 GLDN coding downstream 182317 6564707 ~ 6572022 (-)
CI01000028_06199637_06208451 NA coding downstream 545346 6198701 ~ 6208993 (-)
CI01000028_06092667_06094044 NA coding downstream 659744 6092188 ~ 6094595 (-)
CI01000028_06756364_06785862 TMOD3, TMOD2 coding upstream 1058 6756343 ~ 6788590 (-)
CI01000028_06930121_06933901 BCL2L10 coding upstream 174538 6929823 ~ 6934781 (-)
CI01000028_06937034_06956621 GNB5B coding upstream 181533 6936818 ~ 6956621 (-)
CI01000028_06969947_06983352 NA coding upstream 213064 6965064 ~ 6984084 (-)
CI01000028_07010842_07012858 NA coding upstream 254538 7009823 ~ 7012858 (-)
G149429 NA non-coding downstream 12757 6741383 ~ 6741582 (-)
G149428 NA non-coding downstream 25857 6728248 ~ 6728482 (-)
G149426 NA non-coding downstream 28045 6726032 ~ 6726294 (-)
G149415 NA non-coding downstream 58296 6695840 ~ 6696043 (-)
G149414 NA non-coding downstream 59210 6694885 ~ 6695129 (-)
G149331 NA non-coding upstream 41303 6796588 ~ 6798393 (-)
G149451 NA non-coding upstream 62892 6818177 ~ 6818415 (-)
G149456 NA non-coding upstream 73002 6828287 ~ 6828493 (-)
G149494 NA non-coding upstream 104116 6859401 ~ 6859730 (-)
G149471 NA non-coding upstream 138580 6893865 ~ 6894142 (-)
G149329 NA other downstream 53099 6699513 ~ 6701240 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 4308026 2441332 ~ 2445596 (-)
G146238 NA other downstream 4594301 2147378 ~ 2160038 (-)
G146190 NA other downstream 4643074 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 6278993 473609 ~ 475211 (-)
G149474 NA other upstream 474506 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 770677 7525962 ~ 7535743 (-)
G149923 NA other upstream 1219283 7974568 ~ 8024244 (-)
G150328 NA other upstream 1938113 8693398 ~ 8693743 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013562 NA non-coding NC_007129.7 CM002902.2 39382726 ~ 39389542 (-)