CI01000028_08302370_08504940 (SPON1, SPON1A)


Basic Information

Item Value
gene id CI01000028_08302370_08504940
gene name SPON1, SPON1A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8302247 ~ 8504940 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_08302370_08504940.mRNA
ATGAAAGTGAAGCGATCGGAGATGTGGAGAGCCCGTGTCCTGCTGCTGTTCACCGGATGCGTGTGTGCGAGTGTGCCGGAGGAGCCTGCGGACAGAGCGGCTCCATCTGACGGCTACTGCAACTGGATAACGCGGGCTCAGCCGCACGGAGCTGGAGGCAGGAGAGAGGGCTTCAATGAGTTCAGACTGCGAGTGGAAGGAGACCCGGAGCATTATCATCCCGGCAGCACTTATCGAGTAACCCTGTATGCAACCAACCCTGCGTACTTTAGAGGCTTTACTCTTATCGCTCTGAAGGAAGGGTACAATGGTGACCAAGAGGAGGATTATGCTGGGAATTTCCAGATAATCGACGAGGAAGACGCACAGTTTATGACAAACTGCCCTCCAGCAGTGACAGAAAGCACCCCTCGCAGGAGGACCAGGATACAGGTGTTCTGGACAGCGCCACCGTCAGGCAGTGGCTGTGTACTGCTGAAGGCTAGTATTGTTCAGAGGAAGATCATCTCTTTCCAGGATGAGGGTTCGCTCACGAAGCGGATGTGTGAGAAAGAATCGCTGTATGGAGAAACCACAGACAAACCCCTGCTGGACTGCTGTGCCTGTGGAACTGCCAAATACAGAGTCACCTTCTACGGGAACTGGTCAGAGAAATTGCACCCAAAAGACTACCCAAGGAGAGCCAATCACTGGTCGGCCCTCATTGGAGCTTCCCATTCGAAGAACTATATATTGTGGGAGTATGGAGGTTATGCCAGTGAAGGGGTCAAACAGATCGCTGAACTGGGCTCACCAGTCAAGATGGAGGAGGAGATCCGTCAAAAGGGTGACGAGGTCTTGACCGTCATAAAGATGAAGGCCCAATGGCCAGCCTGGCAGCCCCTCAATGTTCGAGCGGCTCCCTCAGCTGAGTTCTCAGTGGACCGCACACGTCACCTTATGTCCTTTTTGACGATGCTGGGTCCCAGTCCTGACTGGAATGTGGGTCTGTCATCAGAAGACCTTTGCACCAGAGAATGTGGCTGGGTCCAGAAGGTTGTTCAGGACCTCATCCCATGGGATGCAGGAACAGACAGTGGGGTCACTTATGAGTCTCCCAACAAGCCTACAGCACCTCAGGAGAAAATCCGTCCCCTCACAAGTTTAGACCATCCACAGAGCCCTTTCTACGACCCAGAGGGTGGCGCAATCACTCCTGTGGCCAGAGTTGTTGTGGAGAGAATTGCCCGCAAGGGTGAGCAGTGCAACATTGTGCCTGATAATGTGGACGACATTGTGGCTGACATTGCCCAGGAGGAAAAAGAAGAAGATGACACTCCAGAGACATGTATCTACTCCAACTGGTCCCCATGGTCTGCGTGCAGCTCCTCAACGTGTGAGAAGGGGAAGAGGATGAGGCAGAGAATGCTGAAGGCACAGCTGGATCTCAGTGTGCCCTGTCCACATACACAAGACTTTGAGCCCTGCATGGGGCCTGGCTGCAGCGATGAAGATGCTTCCACATGCATGATGTCAGAATGGATCACATGGTCACCATGCAGTGTGTCATGTGGTGCAGGTGTGCGCTCTAGGGAGCGCTATGTAAAACAGTTTCCTGATGATGGCTTTGCTTGCACCCTTCCCACTGAAGAGACAGAGCCATGCACAGTCAATGAGGAATGCTCTCCAAGCAGTTGCCTGGTTACTGAATGGGGTGAATGGGATATATGCAGTGCCACCTGTGGGCTTGGCATGAAAAGACGGGAAAGGATGGTGAAAATGCCCCCGTCTGATGGCTCCATTTGTGGGGCTGAGGTGGTGGAAGCGGAGAAGTGTATGATGCCAGAATGTCATACTATCCCATGTTTACTGTCCCCATGGTCTGACTGGAGTGACTGCAGTGTGACATGTGGTAAAGGCACACGGACACGTCAACGCATACTCAAATCACCTGCAGAGTTGGGAGAATGCAGTGAGGAGCTGGAACAGATGGAGAAATGCATGCTGCCAGAGTGTCCAATGGACTGTGTGATGTCAGAGTGGTCTGAGTGGTCAGAGTGCAGTAAGTCCTGTGGAAAGGGTCACTTGATCCGCACACGCATGATCACTCTGGAGCCTCAGTTTGGAGGAGATCCATGCCCTGAGACCATACAGAGAAAAGCATGCAAGATCAAGAAGTGTAATCAAGGAGGCTTAAACAGTGAAGAGAGGAAGAGACGCAAAGAAGACCGTAAGAAGAGGAGGAACAAACAGGGACGGGAAGAGAGCACAGATGAGCTTGCAGGATGCAAAATGAAGTCGTGGTCTGGATGGACTGACTGTACCAAGCTGTGTGGTGGGGGAATCCAGGAACGGCTAATGACAGCCAAGAAGAGATTCAAAAATGCGCAGTTAAATAGTTGTAAAGACCGAAAGGAGATACGGGCCTGCAATGTCCACCCCTGC

Function

symbol description
spon1a Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in central nervous system; eye; and hypochord. Orthologous to human SPON1 (spondin 1).
spon1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of protein binding activity; positive regulation of protein processing; and regulation of amyloid precursor protein catabolic process. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_08302370_08504940.mRNA False 2424 mRNA 0.52 16 8302370 8504940

Neighbor

gene id symbol gene type direction distance location
CI01000028_08172067_08174791 NA coding upstream 127556 8167516 ~ 8174814 (+)
CI01000028_08134368_08134658 NA coding upstream 167680 8134368 ~ 8134690 (+)
CI01000028_08099613_08100202 NA coding upstream 202077 8099613 ~ 8100293 (+)
CI01000028_07982820_08049229 KIAA1549LB coding upstream 253141 7982771 ~ 8049229 (+)
CI01000028_07961297_07963733 HIPK3, HIPK3B coding upstream 338499 7961297 ~ 7963871 (+)
CI01000028_08595383_08629444 SYT9, SYT9A coding downstream 90381 8595321 ~ 8629528 (+)
CI01000028_08717545_08739805 PPFIBP2A coding downstream 212605 8717545 ~ 8740799 (+)
CI01000028_08769236_08770237 NA coding downstream 264296 8769236 ~ 8770237 (+)
CI01000028_08771015_08787659 NA coding downstream 265840 8770780 ~ 8787906 (+)
CI01000028_08899947_08900924 MAF coding downstream 394590 8899530 ~ 8900955 (+)
G150063 NA non-coding upstream 38764 8263402 ~ 8263606 (+)
G150034 NA non-coding upstream 77098 8224900 ~ 8225272 (+)
G150005 NA non-coding upstream 122174 8179804 ~ 8180196 (+)
G149313 NA non-coding upstream 153684 8148257 ~ 8148686 (+)
G149312 NA non-coding upstream 157970 8144125 ~ 8144400 (+)
G150141 NA non-coding downstream 162736 8667676 ~ 8667927 (+)
G150148 NA non-coding downstream 179451 8684391 ~ 8684850 (+)
G150325 NA non-coding downstream 187161 8692101 ~ 8692302 (+)
G150331 NA non-coding downstream 192273 8697213 ~ 8697440 (+)
G150364 NA non-coding downstream 240567 8745507 ~ 8745816 (+)
CI01000028_07470324_07471346 NA other upstream 831670 7469543 ~ 7471432 (+)
G147693 NA other upstream 2848760 5440454 ~ 5453610 (+)
G147636 NA other upstream 3085759 5216090 ~ 5216611 (+)
G147462 NA other upstream 3312532 4958703 ~ 4989838 (+)
G145843 NA other upstream 5278150 3023146 ~ 3024220 (+)
G150398 NA other downstream 286795 8791735 ~ 8792120 (+)
CI01000028_09661097_09682326 NA other downstream 1168187 9660747 ~ 9684876 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012846 spon1a coding NC_007129.7 CM002902.2 28564640 ~ 28880191 (+)