G145544


Basic Information

Item Value
gene id G145544
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2185836 ~ 2188146 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU165381
GACGCTTTAATATGTGTTTTATTAGACAGGTGACACAACTGTTTGGATACATTCTTCGACAGAAAACTAATCATGTTATATAGCTCAACACAGTAAGTCTTATTGTTTAAATCTTGTTTTCTTGATTTACCACAAGTACCATGTTTTACCATGCCTAATATTGAACTAGCTTACTGCAGTGTGCAACAAGTGTCTCATAGAAGCTGCAGAGCGAACACAGAGTAGCATTATAACAACTGACAACTCAGCACACAAATGTATCTAATATGATAAAACAGCACTCACATATGCTTGACCAGAAGTGGAAGGTAGGGAACGGCATAATAAAAGCTCGGCTGCTCTCGAGCCGTGTGTCGCGCTCGTCTCTCAATTAGCAATCGCACCAGTGGCCTCGTTCTGCTCCAACAGCTTTCAGCCACACCCTGCTTCATACTACAGTAATGTTAGTAAATCTTTAATACATTAGCTCATCCATGAATATGATTTCTGCCCGAGTCCCATTGGATTCTTTTCCACCGGCTGTAGATGTGAAGACAACACCTTCCGTGATTCCGCCTCTAGCGGTGATAAATTACATATTGTACCTTTAAATACGTTTATTGTTGGAATTTCTAATTACTTTTCATATATGATATTATTATTCCAATTAAAATATGAAGTCATCTGCATGGCATTTGGTTCAAAAGGGCATTTCACTCTTGCGATTCACTTTCTTAAATATACTTCCTCATTTAGCCACTTGATGTCACCAAGTAACACTTTATTTGAAGTATAACAATAGAATACAAAGAGAAAATATTCACATTATAATTTCATACTGTCAATAGTAAATATTTTGCATAGGAATCTACATGTTTGTCTGCTGAAGCAGCACCAGTATATTCATAATGCTCATGTAACAATTACTGCATATTATATATATATATATATATATATATATATATATATAATTCTTTAAACTAAAAATATACAGAATCTCATATTTTAATGACCATTGTCCATCTAAATCCAATCTTCAGGACACTCTTAATGGTAACCTGCAAACGACATATCAAAAGCATCCATTATAAATGTAGGGATTTGACTTAATGGAAAGTGCATATCTTAGAGAACAATATCATTTTGAAAAGTAAAAAATATATAGAGAGACAATTGCTTCTAAACAACTGTGTTCAAAAGTCATCTGGACTTTTCCCTCTGTTAATTGACATGTTCAGGAACGAATCTTCATGAAAGAACATTTCTTGAAACAGAACTAGAGATGTGAATATCTATATTCCATCAAGATGACTAATGACTGCTATTAACCATCAGCTGACATTGAGATCAACTACTTTGAACATGACAAGTTGGTAGAAATGAGGTAGTAAATCATAATCAGGTAGAGAACGCAGTCTTATTTCAGTGGAAATGTCTTCAGTACACCTCTAGAAACTGTTTTTATCAAATAACTCCAGCTATTACTTCAACATCAGAAACATGACATAATCAGCTTTGCGGGTACGTCCGCATCAGGATGTCCATAACATGCTCTATCTCCTGGATTTCCCATGTGGCCTGACCATGAGAGTCTAAAGATGAGGATGCTGATGGAGATTTGGACAGGGATGGTAGATAATTCACTAGATCATCAGATAAACCTTGCAGAAGATTCACCTCCGGTTCAAACACAGATGTGTTGATGTCCAGGAGAAGTTTATCTAAAGATACATCCTGAGGACAACCTGGACACGCTGCTTCCATTTTGACAGATGGCACCATGTCGGACGTTTTTTCAGTCCTCGAACCCGACAGAGGATACTGTGCGAGCCTGGCATCTCCTGTTAGATTCTCCACAGAGCCGAGCGGAGCTCGCTGAGGTGCACAAGGCCCTTGACCGCCGGCATCTATGACTGTGTCTAGATCTTTGAGAATGACAGAGATGGCTGAAGATAAAGAGAAATCCTCCTCTGAAGTCCAGGCCATGAAATCGTCCTCCATATTTTCAGCATTCAGCGAGAACAGAGGAGCATTGTGCTCTGATGGAGGGGGCCCTCTGGGAAAATCAGGCTCCAACTCAGAGTGGGTTTGTGATTTAGTGGGTATTTTCACAGCGGACAGCGATTCTACCTGTGCCCGGACCTCGGACTGAACCTGCCGCAGTGTGTTGCTGATAAGAACCGAGCGCAGTAAGCTGGGCTCCACGAGGGCCTGGTCACGGTGGAACTTATCCATGGAGATGTCCAGCACAGACTGCAGCTGACTCTCCCACACTGCACCTCTTCCCTCATCCTCCCTGTGGAGTTTACGCTTCTGTCCTTTGGCCACCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165381 True 2311 lncRNA 0.40 1 2185836 2188146

Neighbor

gene id symbol gene type direction distance location
CI01000028_02175774_02182966 KCNK6 coding upstream 2376 2175524 ~ 2183460 (+)
CI01000028_02165692_02171949 NA coding upstream 12892 2165692 ~ 2172944 (+)
CI01000028_02146358_02159174 NA coding upstream 26617 2146358 ~ 2159219 (+)
CI01000028_02112434_02123527 PLD3 coding upstream 61549 2112434 ~ 2124287 (+)
CI01000028_02066861_02069575 FOXA3 coding upstream 116162 2066861 ~ 2069674 (+)
CI01000028_02211495_02287691 SPTBN4 coding downstream 23349 2211495 ~ 2288048 (+)
CI01000028_02299641_02304780 PCYT1A, PCYT1AB coding downstream 111256 2299402 ~ 2305061 (+)
CI01000028_02452520_02473148 CSTF3.S, CSTF3 coding downstream 264374 2452520 ~ 2473601 (+)
CI01000028_02568775_02584510 WT1B coding downstream 380629 2568775 ~ 2584889 (+)
CI01000028_02738747_02743091 NA coding downstream 550337 2738483 ~ 2743091 (+)
G145556 NA non-coding upstream 49928 2135604 ~ 2135908 (+)
G145494 NA non-coding upstream 97976 2087600 ~ 2087860 (+)
G145488 NA non-coding upstream 103706 2081760 ~ 2082130 (+)
G145487 NA non-coding upstream 104645 2080927 ~ 2081191 (+)
G145444 NA non-coding upstream 269663 1915576 ~ 1916173 (+)
G145519 NA non-coding downstream 919 2189065 ~ 2190747 (+)
G145515 NA non-coding downstream 3401 2191547 ~ 2195713 (+)
G145561 NA non-coding downstream 127647 2315793 ~ 2319340 (+)
G145522 NA non-coding downstream 147249 2335395 ~ 2336299 (+)
G145571 NA non-coding downstream 158649 2346795 ~ 2347033 (+)
CI01000028_00525538_00533862 NA other upstream 1663905 524647 ~ 535245 (+)
G145843 NA other downstream 835000 3023146 ~ 3024220 (+)
G147462 NA other downstream 2770557 4958703 ~ 4989838 (+)
G147636 NA other downstream 3027944 5216090 ~ 5216611 (+)
G147693 NA other downstream 3252308 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 5281746 7469543 ~ 7471432 (+)

Expression


Co-expression Network