CI01000029_00238295_00240090


Basic Information

Item Value
gene id CI01000029_00238295_00240090
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 238008 ~ 240090 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_00238295_00240090.mRNA
CTTCTGCTGGTCGGTGACGTCTTAACCCACACACTGACCCCCAGCCCGACCACAGAGAAGCCTTTGTCTCCTCGACACTACCACCACATCGACCCCGCCACTGGTAACAAGCTGGTGTGCGACAAGTGTCCGGCGGGCACCTACGTATCCTCCCACTGCACAGAGGCCAGCGTACGGGAATGCAGCCCCTGCCCAGACGGCACCTTCACCCGGGGTAGCTTCTCCCAGGGTGGAAAGTGTCAGCGCCACTCATTATGTCCAGTGGGGTGGGGTGTCCGAAAGCGAGGAAGTGAAACAGAGGATGTGCGCTGCCGGCAATGTCCGCATGGCACCTTCTCAGACGTGGCATCAGATGCTCTGAGGTGCAAAGCACACACAGATTGCCCGTCTTTGGGCTTAATGCTGCTGATTAAAGGCACCGAGGAAAAAGATAGTGTGTGTGGCCCAACTCCAGCGAGTTCAGCCTATGTCCTACTTGGAGAGGCTTCCGTTTCCACGGTTTCCAGCACTGAGTCAGCATATAGAGCAAGTACTGCTGTTTTACCAGCTGCAGAGATTCAGGATGTAGCCGAGCCGATCCTCAGTAGCACAGAGGCGGCCCTCAGCTTTGAAGACATTCCCACAACCACAGCTTCCTCCAAGACTAGTGATGAGGATGGAGGACTCTTAATCGCTGCAACTCAGGACCTTGCTAAATCACAACATAAGATCTCCTTATCACAAGACCCCCAACAGGCTGTGGAGACTCTGTCTGAGGGCAAGGCCCAAGGTTTGGGTTATCGGCCTATCCGCAGGGGTTCGCCAAGGCCTAGCACGCACAAGCACTTTGACATCAATGAGCACCTGCCTTGGATGATAGTCCTGCTGCTTCTGCTGGTGCTGATAGTGATCGTGGTATGCAGCGTAAAGCGCAGTTCACGGGTGCTGAAGAAGGGTCCGAGACAGGATCCCAGCAGCATTATGGAGAAAGCCATCCACAAGAAGCCTAGGTCTCCAGCACAGACCAAGGAGAGGTGGATCTACTACTCAAATGGACAGGGTGAGTTAAAACCGCACAGTGCAAAGGTCTGTTCACACCAAGTCTGGTGTGACTAAACAACACAAAAGCATAAGTTAAAGGGACATGGTGATGGGAGGAAAAATTATATTTCAATACTTTTATGTTGGAAATATTTTTTCTTCAATCTCATTTTTTTTTCCATCACCATGTCCTTTTAGGGCCTCTGTCTGATAAGTCTGATTTCCTTTTTTATATATATAATTTTTACTTCTTTTGTTGTTGTAATTTTGATACTTTTTTTATGTAATTTCTCATTTTTCTCATTTATCACCATTTTGGTCAAAATGTATGATCAAAAATGTCATGAAAATACCTGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_00238295_00240090.mRNA True 1382 mRNA 0.49 3 238008 240090

Neighbor

gene id symbol gene type direction distance location
CI01000029_00191495_00216075 NA coding downstream 21817 190195 ~ 216191 (-)
CI01000029_00076210_00177393 NA coding downstream 59103 75630 ~ 178905 (-)
CI01000029_00057245_00073837 NA coding downstream 164171 57245 ~ 73837 (-)
CI01000029_00031332_00056219 NA coding downstream 181789 31025 ~ 56219 (-)
CI01000029_00000004_00021646 NA coding downstream 215453 4 ~ 22555 (-)
CI01000029_00351260_00374024 PTCHD4 coding upstream 111170 351260 ~ 374024 (-)
CI01000029_00400646_00402700 NA coding upstream 160229 400319 ~ 403709 (-)
CI01000029_00520844_00524249 NA coding upstream 279744 519834 ~ 524342 (-)
CI01000029_00532933_00536043 NA coding upstream 292555 532645 ~ 536758 (-)
CI01000029_00553198_00596492 NA coding upstream 312591 552681 ~ 596492 (-)
G151554 NA non-coding downstream 50071 183260 ~ 187937 (-)
G151553 NA non-coding downstream 54916 181378 ~ 183092 (-)
G151603 NA non-coding upstream 67758 307848 ~ 308204 (-)
G151605 NA non-coding upstream 70436 310526 ~ 310749 (-)
G151610 NA non-coding upstream 76545 316635 ~ 316880 (-)
G151612 NA non-coding upstream 78427 318517 ~ 326627 (-)
G151624 NA non-coding upstream 101421 341511 ~ 348897 (-)
CI01000029_01293143_01293964 BATF3 other upstream 1052159 1292249 ~ 1294123 (-)
CI01000029_02589994_02592379 NA other upstream 2352076 2587549 ~ 2592379 (-)
G153891 NA other upstream 3008687 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 3466133 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 4220253 4460159 ~ 4463540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018251 tnfrsf21 coding NC_007131.7 CM002904.2 35797998 ~ 35841570 (-)