CI01000029_00653876_00662303 (SLC5A6A, SLC5A6)


Basic Information

Item Value
gene id CI01000029_00653876_00662303
gene name SLC5A6A, SLC5A6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 653614 ~ 662874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_00653876_00662303.mRNA
ATACTGACTTACACATAAGATAAGTTCACATATGCTGGACTTCTTCATTCATTTAACCCCATTAAACCACGCCCCTTCACAATCGACTGCAAGCTTGCATTTATTTTTGAGTGCAACAAAATTGTGATTTAAAATATATTGTGTGTGTTTTAAGCCATTTTGCACATATTGTGTAAATATTTATTTTTGCCTGTTATAGTGTAATTGCACATTTAAGTAGTGAGTAATAATAATTAACTACATGTACTTACTATAGGTTTAGATTAGGGTTTAGGTTAATTGTATGTAATTAAGCACAATTTATAGTAATTACTATAGTAACTACATGCAACAAGTGTAACAAAGACACTGTAAAATAAAGTGTTTTTTAGAATGTTTAATCAGTAAATCTAGACAATCAGTATAACTTGGATATTCTGTTTGCATGTTTGCCTAAACAGTCTTTTAATTTTTTACAGCACGTCACCGGCAGTCCTTCATGATGACCCAATGGGCAACTATTAACTGACCCTTCACTGATCATCCAGGGGCCACATCGCTCTGTGTGCTCCTCCCCACACCTCACGGCATCATGGGGGACGTAGTTCGAATGCACTTCAGCACAGTGGATTATATCATTTTCGCCGTGCTGCTAGTGGCCTCCACTGGAATCGGCCTTTACTATGCCTTCTCAGGGGGTCGCCAGAGGACCACACAGGAGTTCCTGCTGGCCGACCGCAGTATGCGCTGCCTTCCCGTGTCCCTTTCACTGCTGGCCACGTTTCAATCAGCGGTGGCCATCCTGGGTGCTCCATCTGAGATTTACACACATGGCACGCAGTACTGGTTCCTGGGCTGCTCCTACTTCCTGGGCCTGCTCATCCCTGCACACATTTTCATACCGGTTTTCTATCGGCTCCGCCTTAGCAGCGCCTATGAGTATCTGGAGCTTCGTTTTAGTCAAAGTGTTCGGATATGTGGCACTGTGACCTTCATCTTTCAGATGGTTATCTATATGGGAGTTGTTCTGTATGCTCCCGCACTTGCACTAAATGCAGTAACAGGTTTTGACCTTTGGGGGGCAGTACTAGCCATGGGATTGGTGAGCACGCTTTATACAGCATTGGGTGGTCTAAAAGCAGTGATCTGGACAGATGTGTTCCAGACAATCGTGATGTTTGCAGGGCAGCTGGCAGTGATTGTGGTAGGTACCCACCAGGCTGGTGGCATCGCCGAAGTATGGAGGAAAGCACAAAACGGCAGCCGTATCTCAGGCCTTGACCTGAACCCTGACCCCTTAGAAAGGCACACATTTTGGACTCTAGGAGTGGGGGGCGTTTTCCTCATGCTGGCCCTGTATGGAGTGAATCAGGCTCAGGTCCAGAGATACCTCAGCTCCCGCACAGAGAAAGAGGCCATCATGTCCTGCTATGCTGTGTTTCCATGCCAACAGATCGTGCTCACATTGGGCTGCTTAATGGGTCTTGTTATGTACGCTCGATATGGGGAGGAGAGCCCCCTGGATATGGGCTACGTCAAAACTAATGACCAGATGGTGCTGTACTTTGTAATGGATGTGTTAAGAGATCTTCCTGGTTTACCAGGACTGTTTGTTGCCTGCCTGTTTAGCGGAGCTCTCAGCACAATCTCATCTGCCTTCAACTCCCTGGCAACGGTTACCATGGAGGACCTAATTAAACCACATGTCCCTGTCATGACGGAGGCTCGTGCCACACTGTTATCAAAAATGTTGGCTATTGGCTATGGGCTTGTGTGTCTAGCCATGGCGTACATTGCATCCTTAATGGGCTCTGTTCTGCAGGCAGCACTCAGTATATTTGGGATGGTGGGAGGACCTCTTCTTGGAGTTTTCTGTCTTGGGATGTTTTTCCCTTGGGCCAATTCCACTGGTGCTCTGGTTGGACTGGCATCAGGGCTGATCATGGCTTTCTGGATCGGTATCGGCAGCTTTGTTTCACGAGTGGCTGCATCTGCACCACCTGTGATAAATGGCACCATCATACCTGATGTAGGAAACATGACAACAGCTGTCATGACGACACTCATCACAACTAAACCCAGGCCTACTGGAGTTCAGGCTCTGTACTCTTTATCATACATGTGGTACAGTGCTCATAATTCTGCTACGGTTGTGGTGGTGGGACTACTGGTCAGCTTTCTCACAGGGCCATGGAAGGAGAAGGACTTAAACCCAGGTACGATTTACCCTGTGCTTGGCAATTTGCTGTTCTTTCTGCCCCAACGGTACAAGGAGAAACTATGCTGTGTAACCCCACTGGAAGACAAGTCCAAAGTTCTGGACCACCAGCCTTACCAGATGGCCCAGAAAGAGATCAACGGTGTTGCCTGCACTAAAGAGGAAGACAAGATTAGGGAAGAGGAGGGAGAACAGATAACCGCCCAGCCAACTTGTAACCTGGCCCATACGTTACAGGAAACAGCCTTGTGAAATCTCCCACACTGCGAAAGACCTAAGGGACACTTAGTTTCCCACAGACTCAAGGAGGACAACATCTGTTAAGATGTCAAATTTACAAAATCTCACTGTTCCCTCCTGCTACATTGGGTAAGAACCCTAAGTCCATAAGCTGTGGTTTGTGTCGTGGGCCCTCTGCAAAACTGGTACGCTGTGCCCTGAACCGCCAGCGATGGAGGTGAGGGGTTGTCCTGTTTATATGTGATACTTTATGATGTCAGTGGTCTGTCATAAA

Function

symbol description
slc5a6a Predicted to enable sodium-dependent multivitamin transmembrane transporter activity. Predicted to be involved in biotin transport; pantothenate transmembrane transport; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A6 (solute carrier family 5 member 6).
slc5a6 Enables biotin transmembrane transporter activity and pantothenate transmembrane transporter activity. Involved in anion transmembrane transport and transport across blood-brain barrier. Located in plasma membrane.

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14386 SLC5A6, SMVT; solute carrier family 5 (sodium-dependent multivitamin transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_00653876_00662303.mRNA True 2711 mRNA 0.47 15 653614 662874

Neighbor

gene id symbol gene type direction distance location
CI01000029_00553198_00596492 NA coding downstream 57122 552681 ~ 596492 (-)
CI01000029_00532933_00536043 NA coding downstream 116856 532645 ~ 536758 (-)
CI01000029_00520844_00524249 NA coding downstream 129272 519834 ~ 524342 (-)
CI01000029_00400646_00402700 NA coding downstream 249905 400319 ~ 403709 (-)
CI01000029_00351260_00374024 PTCHD4 coding downstream 279590 351260 ~ 374024 (-)
CI01000029_00671340_00676497 NA coding upstream 8317 671191 ~ 676497 (-)
CI01000029_00740836_00741866 NA coding upstream 77560 740434 ~ 741866 (-)
CI01000029_00743128_00743689 PTRHD1 coding upstream 80228 743102 ~ 743689 (-)
CI01000029_00744455_00749027 SLC25A27 coding upstream 81410 744284 ~ 749027 (-)
CI01000029_00765372_00789010 NA coding upstream 102379 765253 ~ 789010 (-)
G152551 NA non-coding downstream 1846 649876 ~ 651768 (-)
G152557 NA non-coding downstream 127725 525587 ~ 525889 (-)
G152556 NA non-coding downstream 128377 524840 ~ 525237 (-)
G151624 NA non-coding downstream 304717 341511 ~ 348897 (-)
G151612 NA non-coding downstream 326987 318517 ~ 326627 (-)
G152759 NA non-coding upstream 415384 1078258 ~ 1081280 (-)
CI01000029_01186343_01189865 NA non-coding upstream 513895 1176769 ~ 1190647 (-)
CI01000029_01353955_01354599 NA non-coding upstream 690662 1353536 ~ 1354599 (-)
G152918 NA non-coding upstream 776635 1439509 ~ 1439718 (-)
G152933 NA non-coding upstream 791918 1454792 ~ 1455019 (-)
CI01000029_01293143_01293964 BATF3 other upstream 629375 1292249 ~ 1294123 (-)
CI01000029_02589994_02592379 NA other upstream 1929292 2587549 ~ 2592379 (-)
G153891 NA other upstream 2585903 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 3043349 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 3797469 4460159 ~ 4463540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018258 slc5a6a coding NC_007131.7 CM002904.2 36646761 ~ 36671660 (-)
bowfin (Amia calva) AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding CM030121.1 CM030121.1 36748856 ~ 36765206 (+)