CI01000029_00805246_00806809 (CITED2)


Basic Information

Item Value
gene id CI01000029_00805246_00806809
gene name CITED2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 804913 ~ 806809 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_00805246_00806809.mRNA
GGGAATGGTAGACCGAATGATGGCAATGAACCATGGACGTTTCCCAGATGCTGTGAATGGGCATCAGCACTCCGCGCGCAGGATGGTAATGGGACAGTTTTCCAACGCGCTTCCACAGCAACAACATTATAACGTTATCATGGGAGATCACATGCATTACGCGGGAGGGAATGTAAACGCAAACCACGGGATCCGGCATTCCATGGCCTCTGGGAATAATATAAACGGAGGGATCCCCAATGGCAACTTGCCTGCCCGTTTTAACTCCCAGTTTGTCGGACAAGGGCAGCAGCTTGCTGCCAGCATGCAGTTGCAAAAGCTCAACACGCCTTACTACAGTCACCACACGCATCCTTCCCATCATCACCATTACATGCACGAACTGCACCCCGCCAGCCACCAGTTAAACGGGACAGGACAGCAGTTCCAAAACAGTAACGCTAAGCAGAACACGTCTGGGGTTCCTCTGCCTGGCCACCACATGCCTGCAGCAATGCTGCCCCCCAACGTTATCGACACGGATTTTATTGACGAGGAGGTCTTGATGTCACTGGTGATAGAAATGGGCTTGGACCGAATAAAGGAGCTGCCAGAGCTGTGGCTGGGACAGAATGAGTTCGATTTCATGACAGACTTTGTTTGTAAGCAACAGCCCAGCCGACAATGTACTATAAACTTTAGTGGCCATATTTACCAGAACCCTGTGCTGCTCAGAGATTCACTGAACTGTGAGCAGATGCTTCAAGTTGTTCTTCTCTCCACCCTTTCGACATCTACTCAGGCCTATGTTGCCTCCATGATGCTTGTGTGTATATCAGAGCCTAAAAACATCTATTGAAGTGATATGAATGTGAGCGAGAGTGCGCATTTACCGGTTACTCTATATGCTTAATTGAGTACAGTGTATCGAAAAGTTCTGGAAAAGACATTCCAATCCTGAATGTCATAGTCTGGAATGTTGTAAGGAAGGGAATGTGGAAATATCCCAACACAGAAGAGTTTCATCTTCATCGGTTTTCGAAATAGATAGACCACTGTGCTTATTATAGTATGCGGTACATGGCAATACTACTGTGTTGAGGCTTTCTAGGAAAGTTTTACAGTATTTTTGTATATTTTTAGAAAAAAAAAATGTTAATTTATTATATTTTAATTTGCAAACATGAATAAA

Function

symbol description
cited2 Predicted to enable transcription coactivator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including brain; immature eye; lens; optic primordium; and pharyngeal arch. Human ortholog(s) of this gene implicated in atrial heart septal defect 8 and ventricular septal defect. Orthologous to human CITED2 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2).

GO:

id name namespace
GO:0032502 developmental process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_00805246_00806809.mRNA True 1171 mRNA 0.45 2 804913 806809

Neighbor

gene id symbol gene type direction distance location
CI01000029_00765372_00789010 NA coding downstream 15903 765253 ~ 789010 (-)
CI01000029_00744455_00749027 SLC25A27 coding downstream 55886 744284 ~ 749027 (-)
CI01000029_00743128_00743689 PTRHD1 coding downstream 61224 743102 ~ 743689 (-)
CI01000029_00740836_00741866 NA coding downstream 63047 740434 ~ 741866 (-)
CI01000029_00671340_00676497 NA coding downstream 128416 671191 ~ 676497 (-)
CI01000029_00994197_01001813 NMBR coding upstream 185981 992790 ~ 1001813 (-)
CI01000029_01109371_01118517 HIVEP2A coding upstream 302164 1108973 ~ 1119564 (-)
CI01000029_01123207_01149937 NA coding upstream 316124 1122933 ~ 1150937 (-)
CI01000029_01186343_01189865 NA coding upstream 378878 1176769 ~ 1190647 (-)
CI01000029_01198414_01198698 NA coding upstream 391536 1198345 ~ 1199494 (-)
G152551 NA non-coding downstream 153145 649876 ~ 651768 (-)
G152557 NA non-coding downstream 279024 525587 ~ 525889 (-)
G152556 NA non-coding downstream 279676 524840 ~ 525237 (-)
G151624 NA non-coding downstream 456016 341511 ~ 348897 (-)
G151612 NA non-coding downstream 478286 318517 ~ 326627 (-)
G152759 NA non-coding upstream 271449 1078258 ~ 1081280 (-)
CI01000029_01353955_01354599 NA non-coding upstream 546727 1353536 ~ 1354599 (-)
G152918 NA non-coding upstream 632700 1439509 ~ 1439718 (-)
G152933 NA non-coding upstream 647983 1454792 ~ 1455019 (-)
CI01000029_01293143_01293964 BATF3 other upstream 485440 1292249 ~ 1294123 (-)
CI01000029_02589994_02592379 NA other upstream 1785357 2587549 ~ 2592379 (-)
G153891 NA other upstream 2441968 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 2899414 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 3653534 4460159 ~ 4463540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018263 cited2 coding NC_007131.7 CM002904.2 36915143 ~ 36917670 (-)