CI01000029_00994197_01001813 (NMBR)


Basic Information

Item Value
gene id CI01000029_00994197_01001813
gene name NMBR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 992790 ~ 1001813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_00994197_01001813.mRNA
ATGGATCACACTTTCTCTGAGAATACCTCAGCCCATGAGAACTTCACAGATGACTGGACATCAGATGGAGGGGAAACGGTACATTTTATCATTCGATGCGTTATCCCGTCGGTCTATATACTTATCATAACGGTTGGTTTACTGGGCAACATCACTCTTGTGAAAATATTCATCACTACCAGCGCGATGCGAAGTGTACCAAACATTTTCATCTCCAGCCTGGCTGTGGGAGATGTTTTGCTTTTGGTCACTTGTGTACCAGTGGACGCGTTTAGGTATTTCTATGAAGAGTGGATTTTTGGAACTGTGGCTTGTAAGATGATCCCGGTGATCCAGCTCACCTCGGTTGGAGTCTCCGTGTTCACTCTCACGGCACTCAGCGCAGACAGACACAAAGCTATTGTGAATCCCATGGACATCCAGACCTCCAGCGCAGTGTTCTGGACCTGTTTGAAGGCCATCACTATATGGGTTGTCTCTGTACTGCTGGCTATCCCTGAGGCGGTGTTTTCACAGGTGGTTCATATGCCAGACAAGAACACGACGTTCACCGCTTGTGTGCCGTATCCACTCTCCAACGAGATGCATCCCAAGATTCACTCGATTATGATATTCCTCGTCTACTTCCTCATCCCTCTGAGCATTATCTCTGTTTACTACTACCACATCGCGAAGACGCTTATCAAGAGTGCTCATGATATGCCAGGTGAGATTAGTGAGCACTCCAAAAGACAGACGGAGACGAGGAAGCGTCTAGCCAAGATCGTTCTGGTGTTCGTGGGCCTCTTCGCGCTGTGCTGGTTTCCCAACCACGTTCTCTACATGTACCGCTCCTTCAACTATCGGCAGATCGACTCTTCGCTGTCACACCTCATCATCACGCTTGTGGCACGAGTGTTGAGTTTCTCCAGCTCCTGCATGAACCCATTTGCCCTGTACTTGCTGAGCGAGAGCTTCCGAAGGCATTTCAACAACCAGCTGCTGTGCAGGCAGCGCAAATACCAAGAGCGCAACACCAGCTACCTCCAGAGCACTTCTGCTATCCGCATGACCTCCATCAGGAAGAGCACACCTGCCGTGGCCAACGGGCATGGCCAAAAACCAGGAGTCTGCATTTAGCATCTGTTCTCTGAACAGATCAAAACCTGATCTTAAGGGTTGGTGACTCACATTTAGGTTCGACTGAAGTGTTTGGTGACCCAGCTGGGTAAATGGGCAGTTATTGAAGCAGAGAATACAGAATTACTGTTGTAAATATTGCATGTATGTTTTTTTTCCAACGGTTGCAGCGTCGCTTGAGCCCCAGAATGAAATTTGCTTTGAAACATTATTCTTATTGCAAACAGAAAGGAATGGATATCCCACTGATAACTGAAGACTAATTCTATTTCTCCTCAAGCAAAATACAATTTCTGGCTGTATAAAATATCAGATCTGTACAAAAGATTGGACTAAAGTTATTATTCCATTATTGTATAATGGCAAGTTTGCTTTTCAGCTCAATCAATTTTCCTTTTTCATCCAGACGAATGATGAAAATTCGACTGTAATCGATGGAAAGTGCACTTAATACAGTAAATGAATGTTTGGTAAAGCAGTTTTGATTTCACCAGGAGGACAACCGTATTACAAAGATATCACTGAAATCATTTACATTGCCTATGATCACATTCTATTTCTCATACATAGACAATATATTCACAATATATTCAATTTAGGAGTAACGGGAGCATAGACATGGCTCTTTCCAGTGAATGTTAATGTCTACTATGATAGATCAGACAGGTCACACACTCAAGGGTAAACTGTGGTGATTAGATTAATATATGCATAACCAGATTAGGATTCAACATGAATATAAATTTCTCAGACACGTTCCCCTGTACCTTCCGATATATGAGTCATAGGAACGCCAAGATCATTATGGCAGACTAATGTCAATAACGCATGCTGTGTATCATTCTTAGATTCACCAGCAAATGTTATCCTCTTAATCACTGCATTGCAGTATATCATCTTTAAATCATTTTTGTTTGGAGTGATTTGTGTCCACATCTAATGGAGTAGAACAATCATACAGGTGGAAATATTACCTATAATCTGTAGTGACTGTCATCAGGAATCCGGACTGAAAAAGGCAGTCACGTTTAAGCCTTTGATGAGGTCCCAAACCTGCAAAAATGTGTTCAGTGAGCTTTTTGTGATCTTGTGCCACTTACACACACACATTTTACTGCTCACAATTTCATTCAAACCTTCAAATTATATATCATTGTTCATCATAATAGGCCTACATTTTGGTCTCTCTTACTGAACAAGTCAAATGACATTTTAAAGAATTTTAATTAACTTTTCTTCAAAACGATGAAATCCATTTTAATGGAAAATGTAATTAGTGATAACTAATTACAATAATTTGTCCTCTCTTCAGTCCTCTCAACACAGAATCTTTGACCTAAAGCAATGCGTTTTAATTATGCTGAAAATTAACGTGACTTGCCCGAGACTTGACTTATGTCAAATAAA

Function

symbol description
nmbr Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human NMBR (neuromedin B receptor).

NR:

description
neuromedin B receptor, partial

GO:

id name namespace
GO:0008528 G protein-coupled peptide receptor activity molecular_function

KEGG:

id description
K04168 NMBR; neuromedin B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_00994197_01001813.mRNA True 2526 mRNA 0.42 3 992790 1001813

Neighbor

gene id symbol gene type direction distance location
CI01000029_00805246_00806809 CITED2 coding downstream 185981 804913 ~ 806809 (-)
CI01000029_00765372_00789010 NA coding downstream 203780 765253 ~ 789010 (-)
CI01000029_00744455_00749027 SLC25A27 coding downstream 243763 744284 ~ 749027 (-)
CI01000029_00743128_00743689 PTRHD1 coding downstream 249101 743102 ~ 743689 (-)
CI01000029_00740836_00741866 NA coding downstream 250924 740434 ~ 741866 (-)
CI01000029_01109371_01118517 HIVEP2A coding upstream 107160 1108973 ~ 1119564 (-)
CI01000029_01123207_01149937 NA coding upstream 121120 1122933 ~ 1150937 (-)
CI01000029_01186343_01189865 NA coding upstream 183874 1176769 ~ 1190647 (-)
CI01000029_01198414_01198698 NA coding upstream 196532 1198345 ~ 1199494 (-)
CI01000029_01245770_01245984 NA coding upstream 243705 1245518 ~ 1245984 (-)
G152551 NA non-coding downstream 341022 649876 ~ 651768 (-)
G152557 NA non-coding downstream 466901 525587 ~ 525889 (-)
G152556 NA non-coding downstream 467553 524840 ~ 525237 (-)
G151624 NA non-coding downstream 643893 341511 ~ 348897 (-)
G151612 NA non-coding downstream 666163 318517 ~ 326627 (-)
G152759 NA non-coding upstream 76445 1078258 ~ 1081280 (-)
CI01000029_01353955_01354599 NA non-coding upstream 351723 1353536 ~ 1354599 (-)
G152918 NA non-coding upstream 437696 1439509 ~ 1439718 (-)
G152933 NA non-coding upstream 452979 1454792 ~ 1455019 (-)
CI01000029_01293143_01293964 BATF3 other upstream 290436 1292249 ~ 1294123 (-)
CI01000029_02589994_02592379 NA other upstream 1590353 2587549 ~ 2592379 (-)
G153891 NA other upstream 2246964 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 2704410 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 3458530 4460159 ~ 4463540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018264 nmbr coding NC_007131.7 CM002904.2 37263663 ~ 37287107 (-)