CI01000029_01109371_01118517 (HIVEP2A)


Basic Information

Item Value
gene id CI01000029_01109371_01118517
gene name HIVEP2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1108973 ~ 1119564 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_01109371_01118517.mRNA
AGTGCTCACATCGCCTTCCAGACACCAGCGTCACACAGTTTCCTCACTCGTTCTCAGGCAGCACTGTCTGTTGCAATCAGAACGAGCCTGAGTTTAAGATATACATCACACAGAGAGCGTGTTTAACATATCTTCCCTTCACAAACACATTCATGTTCTATTTATTGCTTTGAGTACTGTAAAGTTGCACAAAAAGTTGTCCAAAGTTGTACTGTACCTTGATGCTGTATTTTTAATATTAAGTGTTCACAGTGTTAATGTTTTCAAAAGCTTAGAAAAACCCAAAACTCTTAAGGAAGAAAATGCTTAGAGTTTGCCCTTTAAACACCCACCCACACTACTTCGAATGTCATTTGCATTCCTTGGGCTATTTTTATATGTTTGTGTCACTTTAGGAAATGAGTGGGCAAGGTTGTTAATGATGACTCATGAGCAGAGGGAGGTGGTAGCTCCTCTGCATCAGTTCATTGAAAACTCTTGACACACTTGCTAGACGAGAAGTACACATCTGTGCAGCTGCCTACATAACAAACTGAAATAAAACAAGAAAGCAAGCTGTATTTGAAGTATGATGAGCAAGAGTCACATGATCAACTACCATACTGTTTTGTTTAGACAGCTGAGTATGATTTTTCCCCAGCTTTTTTAGATATCAACTTTCCAAATCTTAAGGTAGTAGTGTTGAATATGTAGTATTTTCTGTAATACATTTAGAATCTTTGTCTAAAAAGCAATGTTCAAACTTTGGTTTTATTTTTTCTCTCTCTTATAGATACTGAAACATCAGAGGTCTTTAAACAGAGGAGGAACAACCTTGGATGAAACAAAAAGTGAATGGACTGCTGAAATGAGTGATGGAAAGATACTGGCCTGATTGTCACCGAGGGACATAATTTACATTTTTAAAGTGGAGCGACACTTGAACTATGGAAGTGGAAGGACCTTTTATTTAGGAGTCACTTAAGTAACTCATCTGGCATGACAGCGTACATGAATGAAATTTAGCAAACATCCATCTTAAGAAACCCCATTGAAGTACTAATAAAAATGGAGCCACATGAACCTGCTGTTGGCCAAAAATGCACCAAGGAGCAACGGGAAAAGAACCTCTTACAAAGAAAATGGGTCTCTGAGCCTTCAGCTGTAACAAAAAGAAGTACCTTCGCAGATCCAGATGTTAAAAGACACTCACATCGTGAGCAAAGTCTTACAAGTGGGACAAGCCTTGCAAGCTCAACTCAAAAGTTTAGCTCTGGAAAGCTGATGTCATCTGCAGTGACACACTCATCACAAGAAAGTCAGTTTCAACAGGTTTTCCCTCGGCCTTACTCCTACCAATTGCCACATTCATACCCGCAAGAGCCTTTCCTTGGCGGTACAAAGCCACAACCTGGGTTAGAGGCCCATGCCTGGCCTTTCTCTGGTCCACTGCAATCTCTGCCACCAGATGATATGTTTCCTGTTCACTCCCGCTCTCATGGAGTATTTCCCCGTCAGAAGTCTCCAGCTGGTTTTGGCCAGTTTTCCCAATCTGGACCCGAGCAGCCAGATGAAAGTCATAAGAAGGAACAAAAACCCAAGAAGCCAGGAAAGTACATATGTCACTACTGTGGCAGGGCATGTGCTAAACCCAGTGTGCTCAAAAAACACATCCGGTCCCACACAGGGGAGCGTCCTTATCCCTGTGTTCCATGTGGTTTCTCATTCAAAACCAAGAGCAATTTGTATAAACATAGAAAATCTCATGCTCATGCTATCAAAGCAGGACTTGTTCCATTCTCTGAGCTAGCAACTCGAACAGACACTGATCAAGCATCTTCAGTTGGGGAAGCAGAGGCACACTCTGACGGTGAACAAAGCACAGACACTGATGAGGAAACTGCAGAAGGGGCAATGTTCCCTGAAAAACGTAGCCCACAGATATCATTCGAGTCTGACAAGAGCCAAATGGAAAGGGGACCAGCATATGCAGATCCAGCAGAGGAACTGTCCGTGGCATCTATGAAAGTGCCTATCTTAATTGTTCCAAAACAAGGGGTTCCATCACCTGCCACAGAGTGTCCCCAGTTTACAGACATTAAAGGTTCAGTTATTGGTGGACAGATGGGCAGAGGAGATGAGTCTCATACAGTTAAACAGAAACTTGCCTTAAGACTCACTGAGAAAAAGGACCAGGATTCAGAGCAGTCGCAAAATCTCTTAAGCCCCCACAGCAAAGGTAGCACTGATTCTGGTTATTTTTCCCGCTCAGAGAGCGCTGAACAGCAGATCAGTCCACCCAACACCAATGTAAAGACATATGAAGAGATAATGTTTGGAAGAACTTGGTACCACAGAACCAACTCCAGATCTAGACAATCAGTCACAGTTGGGATGGTAGCTATTGCTAGTCAAGACACTAATATCAACAATTCTAGTGCCATGCAGGAGTTGGCCATGGGAAAGATATCAGAGGGTCATGTATTTTATCAAAGTGATTGTGCAGAATCTCAATTAATTGCTGGATGTGACCCAAAGCATTATCATGCTGGCTCTTGCCAAACTAACACAGGTCTTCTTGAAGCACCCTCTGATTCAGGGCCACTTATTAGAAGCAACTCAATGCCAACACCTTCCCCTACCAACCTCAATGTCCCACCAAGTCTAAGAGGGAGTCACTCATTTGATGAGATGATGACCCAAGATGACGTCTTTTACACAGGAGCCGTGGGTCTAAAGAGGTTAAGGAGACAGGGTGCCTTTGAACACTCTGCCCAAGAAGGGCATGGAGAGTCAGAGAACTACGGGAAGATCACAGGTCCGAACTCTTTGAAAATGGGAGAGAGGGGGTCTTTGATGCCAGAATTTAAAGGCTCTGGCTCAGAGATGGCTTGCCCAGAAGTACGCACAGCATACACTTCATATGGTACAAAGGTGGGAATGACAGAGTTCACCACAAGAAAACGGCGCATGAAAAAGAGTGTTGGTGAAGAGGAAGATTGCCTTGGACAAGATGATGGCAGTCGGAGTGGCTCTACTGAAATCACAGGGGACTATGACCTAAGACAAGGAAGTCAAGATTCTGCCAAGGCTGCTCCTGCTAGTAAGGGATCCATGTTTAGAGCACACAGTCCATCAGACAGTTTTGACAGAGGCTCATGTATGACACCAGAGGATGTGGTACTTGTTCAAGATTCAGACACAAAGACTGCTGGTAATGTAATATCTGTCATTCAACATACTAATTCGCTGAGCAGGCCAAACTCATTTGAGAAGACTGAATCAATTGAACATCCATTTTATCAGCCAGATAAGCATGCTGGACATCTTTCTGAGCAATCAGACACAGAAAACATTGATGATGTGCAGAGCCCTGATTCTCATCATAGATCAGAAAGCATGGAACATCAGCAGCAGGGTGACAATGAGCATGGATCTTTCTCTTCTAACCCACTGTATCATATGCCACACAAACTTGTACGACAACCCAATATTCAAGTGCCTGAAATAAGAGTTACAGAAGAGCCTGACAAACCAGAAAAAGAACCTGAAGTACCAGTGAAAGAACCAGAGAAACATGTTGAGGAATTTCAGTGGCCACAAAGGAGTGAAACATTGTCCCAGCTTCCTGCAGAGAAGCTACCCCCAAAGAAGAAACGTCTGCGTCTTGCAGATATGGAGCACTCTTCTGGGGAGTCAAGCTTTGAGTCCACTTGTACTAGCCTTTCAAGAAGCCCTAGTCAAGAAAGTAACTTATCTCATAGCTCAAGTTTTTCAATGTCATTTGACAGAGAGGAAAGCATCAAATCTGTGTCCCCAACTAAACAAGAAGACTTTGCTAAGCAGTCTGAGTTCTTAACTGTTCCAGGCAGTGGCCATTCTCTGTCTATACCAGGCCATCATCAAAGAGAGATGCGACGCTCCTCATCAGAGCAGGCACCCTGTGCTTTGCTCACTGAAGTACCAGAAATACGTAGTAAGTCATTTGATTATGGAAGTCTTTCAACCGGTTCAAGACAAGGGGAAGTATATGCAAGTGCTTCAGCTATGAAGGAGCGTAGACGTGGTTACCTGGTTAGACAGGCATCTCTCAGTGTCTATCCTGAAGTAGTGGTTCAAGAGCCAATCTCAGAGTTGAATATCAAACAAGAGCATTCTGACCATGTTTCTCAAGCTGCTTTAATTGGTACATCCTATTGTGTAACTAGTGACATGGCAAGACCCAGAAGAGCAACACAGTCAGTTCTAGGATCGCATCACTTGCTGCAACAAAGCATCAGTGAGGACAGCCAATCTGAGGATCATTTCCAGAATGCTCCTCGTTTGCCTGCACAGCTTTCATCAGATAGTGAGCATTCAGTGCATGAGCACATGACCCAGGATATAATTCAGCACTCTTCACTTCAGAGCAACATGGCAACCTCACCCTTCTTGCCATTTCAGCCAATGCTCTGGCATCCTGAATCAACACAAAGAAACAAGCAACACCTGGCTTTCCAGACACATCAGTTACAGAAACTACATATCAAACAGCCAAATCTACAGCCCATTCTACAGAAACAATACCAACCTCCACATCAAATTCAAGTGCAAACAGACTCAAAAACCGATGGGGCAAGTCACAACTATCCCTATCCCTCAAGAGCCTCCCCACAGCAGCTTGGGGTCTTGTCATCTAAAGTGCTGACTACAAGCTTCTTACAACAAGTTCAGCCTATCTTTGCTACTCAAAATGTAGGTTCACAACCCTCACTCCCTGGAATGCTGGTCCCAGTCAGGATCCAGACAAATGTGCCATCTTATGGGAGTGTTATGTATACAAGTGTTTCACAGGTCTTTGTCACTCATGCTCAGAGCACAAATTCTATCAGAGTTATATGCACAGACAATGTGTCGACTGCTTCACTAACAGGCACTGGATCAAAGCACCAAGTAGGCATCAATTTATCCAAAATATTAGGACATTCTGAAGGGTCCTTAAATTTTCCAATATGGAAAGTTCCTGAATATTTACCTGGGAGCCTTAATACAGGAATTCCTTTGTCTCTGACGTCAGGAACTATCTCTACTACAGATGCTTCCTCTAGTATCGGGGGGAGCAAGAGAATGTTGTCGCCAGCTAGCAGTCTTGAGCTTTTTATTGAAACCAAACAACAGAAACGGGTCAAGGAAGAGAAGATGTATGGACAGATAGTGAAAGAGCTTAGTGCAGTTGAGCTGAGCAATTCCAGTGCACCGAAAGATGATAAGTCCCCCAAATCTGAATTTTCAAAGAGAGATGACTCCATAGATGAACAAGAGAGGATGTCCTCATCTCCACCCTCTGATTTCTTGTCGTCTAAATTACTTGGGTACCCATCTGCACCTCATTTACCTGATGTGCCTCCAAAAGACAACTTCATTCCACCCTTGCAAATTATTACAAATGTGGCTAGCAGAGCAGATTCCCCAGAAGAGCTTGATGTAGATGAGTCTACCCCAGAGGCAAGCTCAAGTCCACAATCAGTAATCTCCTCAAGTGATACTCAAGAAGAATCCAAGCAGAACATGGGTAACAAGTTCCCAGTAAACATGCTGGTGCAGCTAGCTGCCAATCAGGGTGGTGGAGGAGTTGCTGGTAGCACTCTCCTACTCACTGATCTTGCAGATGTCCATCAGTTCTTTCAATTCCCAAGTCTTCGCACACCAACTAGTGTCAGCTGGTGCTTCTTAAATTATACCAAGCCAAATTACGCACATACAACTCCCCTAACCTCTGTGTATGGTTCTTGGTGCGTCAGCTCTTACAACCCCAACCCACTCAACCTCAGCACCAAGGCCACTCTGGCACTTCTTCGGTCCAAACAGAGGAAGAACACAGAGATGTATACAATGGCTGCTATGCATCAACCTGGCACTGGAAAACTTGTTTCATCCCTCCGGTGGAAACAGAAGTTTGAGCAGTTGAAGCCTGAGCTTATACAGTTTGATGTTGGGAAGTTTGGGAAGAAAATGAAGGGAATTAGCTCAAGAGACAGGGGAAAAGAGGACCATGGAGAAAAAGAAGCTTCTTCAAAGCAGGCTGAACCCACTCGCATCAAAATCTTTGAAGGAGGGTACAAATCCAACGAAGACTATGTTTATGTGCGTGGCCGAGGCCGGGGAAAGTACATCTGTGAGGAGTGCGGGATCCGCTGCAAAAAGCCAAGCATGCTGAAGAAACATATTCGCACACACACAGATGTCAGGCCATATGTCTGCAAGTTTTGCAACTTTGCTTTTAAAACAAAAGGAAACCTTACGAAACACATGAAGTCAAAAGCTCACATGAAAAAGTGCTTAGAGCTTGGAGTGTCAGTGACATCTGTGGATGAGGCTGAGGCAGAAGAACCAGACACCACTGAGGAGGTTCAAAGAGCATCAGAGAAGATGTCAGAGATAATGGCAGAGCACCAATTTTCTGACGCTGATGACTCGGAGGGTGCTGAAGAGGATGGTGATGAAGTTGATGAAGACGAAGATGAGGATGACGAGTATGATGGTGATTCAACACCGAAAACACGGTCTCGAAGCACAAGCCCACAGCCATGTGCCATCCCCTCACACTCCATCACTGTCGCTGCTTCACAGGAATCCACCCCGGAGTCTCTGGCCTCTGTCTCCAAACAGCCTCTTTTCACTTATTTTACTAGTCTGCCCAGTATTCAGATCACCCAGCTCATGGCACCCAGTGAGAAAGCTGGAGAGGCCCAGATGGCTGAATACCAGAAGCTCCTTCAAGGGGCTCTGGGTGAAGATCACAAAAACAGACTGGATGTGCCTAGCTCTATGGATGAAGACCTGGAACACAGCTCATCCTCCTTTGACTTCTGCTCCCGTCTGTCTTCACCTGGCTGTGATTCCTCCCCTCTTCGAGAAAGCTCACCTTCCTCTAGGCGGTATCTGTCCCCTCGAAGGGACCTCTCCCCACGTGGCCGTTTGTCACCAAGGCGTGAAGCATCTCCCCTTAGGCATATCTCCCCCAGGCGGGATGTTTATAGAAGGGATTTGTCACCAAGGAGGGACCTTTCTCCTAGAGGACATCTCTCTCCCATCTCCCAGACAGGACGGCCGACATCCCCAGGAAGGGATCTCTCGGGTAGACTTTCTCCCAGAAGCCGCAGGGGCATGATCAGACCTGTGTCCCCCAGGAGGGCTCTCCATTATCAAAGTAGCCCATGGGCGCTCAGCCCCAGTCCACATGCAGAGATGATATCATTAAGCCAAAAGACCAAGGGCCATGCAGAATTGGAGATGGACCAGCGAAAGACATCTCATCGTCAAGGGGATGCGCGCAACACAGATGCCTCTAGCGTCCACCAGGGATTATTTAGCCACCTTCCCCTGCACTCCCAGCAACAGATCCGCACTCCGTTCTCCATGATACCCATTGGCGGCATCCAGATGGTCCATTCTGTGCCCGCTTCTGTCACAGGTCATGGCCACCCTACACGCCTCCCCCTGCAGAAGAGCACCTCGGAGGAGTCCAGCACCAGTGAGGTGTCCTACCACCTTTCTGAGGGCAGAGGGCCCTCCAGCAGAGGCCCAGAAGACTCGCCTCAACCCCATGAAAAATCCATGTCCCCCAATGCTCCATCACCTTCCTCACAAAAGTCACGAGAGGACAGCACCGACGTGTCCGACAAGGAAAGCAAGCAAGAAGAGTGCATCCAAACGTGCACTAAGGCAATTGCGTCGCTGTGCATCGCCTCTGAGGAAACCCCCGAAAAATCGTCAGTTCCTGTCGATCCTTACCATCAGCACACATTATCTCACTCACCCGCAGCTCAGCAAGACTGTGCGGCGAGAGCGCAGCACTATTGCAGCTCAGAGATCAGTCACCCCCTACACTCCAGAGCAGAGAGCAGTATGTCTGCCACATCAAAGACTCCCGCAGCAAGCCATCCCACTCTCTACAACACAGAGACGGCAGAGCGAGCGCCTGGCCAACAGGGCCGTGGAGAGAGGCCAGCGACCATAAAGAAAGGCAAAGATTCAAAAGACGCTATTAACAACAGGTGAACAAGGTCGAAGGGAGAGTGGTAAATTATGCTAACACATTTTATATTTACAAATGTACATCCATGCACACACACAAAATCAGTCTTGAAAAGTGAACTGATTCCGTGGGTTCAATGTACATGTATAGCATGCCTTTTATAACATGGTTTGCTATCTCAACTATAATTACTTTCTTATTTAAAGTTTCAAAGAATAGACATATATATATATATATATATATATGTTAACTTATACATATATGAGCCTGACCAAAATTGCTTATGGACTTTGTCTGGTACTTTTAAAAAATGTACAGATGTGTGTGCCTTTTCTTTACTTTTTGCTTATATTCTTATAAGCATTAAACAGGAAGACATGTAAATATATATCGAGTTTTGTGTACCCCGCTTTGTAATAAA

Function

symbol description
hivep2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain; hatching gland; paraxial mesoderm; and tail bud. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 43. Orthologous to human HIVEP2 (HIVEP zinc finger 2).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09239 HIVEP; human immunodeficiency virus type I enhancer-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_01109371_01118517.mRNA True 8417 mRNA 0.45 6 1108973 1119564

Neighbor

gene id symbol gene type direction distance location
CI01000029_00994197_01001813 NMBR coding downstream 107160 992790 ~ 1001813 (-)
CI01000029_00805246_00806809 CITED2 coding downstream 302164 804913 ~ 806809 (-)
CI01000029_00765372_00789010 NA coding downstream 319963 765253 ~ 789010 (-)
CI01000029_00744455_00749027 SLC25A27 coding downstream 359946 744284 ~ 749027 (-)
CI01000029_00743128_00743689 PTRHD1 coding downstream 365284 743102 ~ 743689 (-)
CI01000029_01123207_01149937 NA coding upstream 3369 1122933 ~ 1150937 (-)
CI01000029_01186343_01189865 NA coding upstream 66123 1176769 ~ 1190647 (-)
CI01000029_01198414_01198698 NA coding upstream 78781 1198345 ~ 1199494 (-)
CI01000029_01245770_01245984 NA coding upstream 125954 1245518 ~ 1245984 (-)
CI01000029_01252971_01257256 NA coding upstream 133235 1252799 ~ 1257256 (-)
G152759 NA non-coding downstream 27693 1078258 ~ 1081280 (-)
G152551 NA non-coding downstream 457205 649876 ~ 651768 (-)
G152557 NA non-coding downstream 583084 525587 ~ 525889 (-)
G152556 NA non-coding downstream 583736 524840 ~ 525237 (-)
G151624 NA non-coding downstream 760076 341511 ~ 348897 (-)
CI01000029_01353955_01354599 NA non-coding upstream 233972 1353536 ~ 1354599 (-)
G152918 NA non-coding upstream 319945 1439509 ~ 1439718 (-)
G152933 NA non-coding upstream 335228 1454792 ~ 1455019 (-)
G152935 NA non-coding upstream 337401 1456965 ~ 1457196 (-)
CI01000029_01293143_01293964 BATF3 other upstream 172685 1292249 ~ 1294123 (-)
CI01000029_02589994_02592379 NA other upstream 1472602 2587549 ~ 2592379 (-)
G153891 NA other upstream 2129213 3248777 ~ 3286554 (-)
CI01000029_03698769_03707177 NA other upstream 2586659 3698572 ~ 3707883 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 3340779 4460159 ~ 4463540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location