CI01000029_01475527_01497973 (EHD3)


Basic Information

Item Value
gene id CI01000029_01475527_01497973
gene name EHD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1474930 ~ 1498068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_01475527_01497973.mRNA
AAATAAAAATCTCTCTAGAGAAAAGCGGCAGTACCAACCATCACCATCCGCAACCATGGCGCTGCATCCCTGACTGAGCTCTTGTGCTCTGGGTGGGGCTTTGCCAGCAGTGGGGGCATTTCCTCCAGTGTCGGGTTTCTCCAGCGCACTGGCATTTAAATCTGCGGCAGTGGGAAACCTTTGGACGTCTGTCATCGTGAGTGAATCTGCTCTGCTGGAGAATTTCGCGCTCGTTTTCTTTTCTCTTTCAAATTTCCAACACTGTATCTCTTGCGTTCGCTGAATTGTTGCGTCTAGCGGCGCGCGCTTGTATTCCAACAAAGCCTGAATGAAAATCTGCCTGTTTGGCCATGTTTTTGACCATGACATATGCGCAGAATATTATGTAATGCATTATATTTTGTAATTATGGTTTAGTCTTGTGAGCATTTTGTGTCGTGAGTGGCCTAGAGACAAGGGAACATTTTCAATGGACTCTTAAATACATCTACGTCAGAAGAAAAATCCATTCATTTGAATACGGCTCGTTGGTGCATAAATAATTATCCAAGAAAAACAGAAATAATCGTGTAAGGTTGCCTATACTCGAGTTGCATCATGTTCAGCTGGTTGGGAACCGACGACAGGAGGAAGAAAGATCCAGAAGTCTTCCAGACTGTCAGTGAAGGACTGAAGAAGCTCTACAAAACCAAACTGCTTCCACTGGAGGAGCACTACAAATTCCATGAGTTTCACTCACCCGCTTTGGAGGATGCAGATTTTGACAATAAACCCATGGTTCTCCTGGTGGGACAGTATTCCACTGGCAAAACCAGCTTTATAAGATATCTCCTGGAGCAGGACTTCCCTGGTATGCGGATTGGTCCAGAACCCACAACTGACTCCTTCATAGCAGTGATGCATGGCAACATGGAGGGACTAATACCAGGAAACGCACTGGTTGTGGATCCCAAAAAACCCTTTCGGAAACTCAACGCCTTTGGCAATGCCTTCCTTAACAGGTTTGTGTGTGCCCAGCTTCCCAATCCTGTTCTGGAGAGCATCAGTGTGATTGACACTCCAGGAATCCTGAGCGGAGAGAAACAAAGGATCAGCAGAGTTGCTAAAGAAGATGGCTTTGGTTATAGCTGCCTGCATAAATGTCTGTATGGAGGTATTGTAGATATTGCCAAACTACTGTTAACACCTGCAGCTTATTACGCCAATGAAGTTCCAGCACCGCTCGACTCCAGACGCTATGACTTCGCTGCGGTGTTGGAGTGGTTCGCCGAGCGCGTGGACCGCATCATCCTCCTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCGGAGGTCATCAAGGCCCTCAAGAACCACGAGGACAAGATCCGTGTGGTGCTCAACAAGGCCGACCAGATCGAGACGCAGCAGTTGATGCGCGTCTATGGTGCCCTCATGTGGTCGCTGGGGAAGATCGTCAACACACCTGAGGTGATTCGTGTCTACATAGGCTCCTTTTGGTCACATCCGTTGCTGATTCCAGACAATCGCAAGCTGTTTGAGGCGGAAGAGCAAGACCTGTTCAAGGATATCCAATCGCTGCCCCGCAACGCCGCTCTTCGCAAGCTCAACGATCTGATCAAGAGAGCTCGTCTTGCTAAGGTCCATGCATACATAATTAGCTCCTTGAAGAAAGAAATGCCTTCGGTCTTTGGGAAGGACAACAAAAAGAAGGAGCTGATTAACAGCTTGGGTGAGATCTACAGCCGCATTGAGAGGGAACACCAGATTTCCCCGGGAGACTTCCCTAATCTTAAGAAAATGCAGGAACAGCTTCAGGCACATGATCTAAACAAGTTCCAGCCTCTGAAAATGAAGCTATTGGATGCCGTGGATGACATGCTGGCCCACGACATCGCCCAGCTTATGGTTCTGGTGCGCCAAGAGGAGACGCAGCGGCCCAATCAGGTGGTCAAGGGCGGTGCCTTCGAGGGCACCATGAACGGGCCGTTCGGACACGGATATGGCGAGGGAGCCGGCGAGGGCATTGATGAAGTCGAATGGGTGGTAGCACGTGACAAACCCATGTATGATGAAATCTTCTACACTCTCTCGCCCGTCAATGGCAAAGTGACTGGGGCCAATGCCAAGAGGGAGATGGTGAAGTCCAAGCTGCCAAACACTGTGCTGGGTAAGATCTGGAAGCTGGCTGACATTGATAAAGATGGGATGCTCGATGATGAGGAGTTTGCCTTGGCTAACCATTTGATCAAGGTCAAACTAGAAGGTCACGAGCTTCCAAGCGAACTGCCTGCTCATCTTTTGCCGCCATCTAAGAGAAAAGTTACAGAGTAAGATTGATGGAATCGGGATGGATTTTGGAAAAGCGAATAGTGTGAATTTAGGTTGCAGTTGAATTATCGATGGCTGGACAACTATTATATTATAGA

Function

symbol description
ehd3 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in ciliary membrane and endosome. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye; neuromast; photoreceptor cell; and retina. Orthologous to human EHD3 (EH domain containing 3).

GO:

id name namespace
GO:0055038 recycling endosome membrane cellular_component

KEGG:

id description
K12476 EHD3; EH domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_01475527_01497973.mRNA True 2435 mRNA 0.49 7 1474930 1498068

Neighbor

gene id symbol gene type direction distance location
CI01000029_01396098_01435688 GALNT14 coding upstream 38852 1395443 ~ 1436078 (+)
CI01000029_01318644_01336634 NA coding upstream 138009 1317774 ~ 1336921 (+)
CI01000029_01304740_01313262 FLVCR1 coding upstream 161665 1302326 ~ 1313265 (+)
CI01000029_01297680_01300190 TATDN3 coding upstream 174684 1297611 ~ 1300246 (+)
CI01000029_01284636_01285656 NA coding upstream 188972 1284636 ~ 1285958 (+)
CI01000029_01526863_01527414 NA coding downstream 28686 1526754 ~ 1527899 (+)
CI01000029_01533005_01534392 NA coding downstream 34407 1532475 ~ 1534556 (+)
CI01000029_01542500_01557216 C1ORF95, STUM coding downstream 44082 1542150 ~ 1558713 (+)
CI01000029_01616562_01644867 ADCK3, COQ8A coding downstream 118367 1616435 ~ 1644880 (+)
CI01000029_01653157_01657944 NA coding downstream 154772 1652840 ~ 1658005 (+)
G152002 NA non-coding upstream 1465 1473029 ~ 1473465 (+)
G151997 NA non-coding upstream 9442 1465211 ~ 1465488 (+)
G151996 NA non-coding upstream 12617 1462004 ~ 1462313 (+)
G151991 NA non-coding upstream 18513 1456207 ~ 1456417 (+)
G151982 NA non-coding upstream 29739 1444912 ~ 1445191 (+)
G152034 NA non-coding downstream 26928 1524996 ~ 1525200 (+)
G152018 NA non-coding downstream 160540 1658608 ~ 1658858 (+)
G152021 NA non-coding downstream 160926 1658994 ~ 1659667 (+)
G152025 NA non-coding downstream 162479 1660547 ~ 1660811 (+)
G151495 NA other upstream 1103008 366541 ~ 371922 (+)
G151415 NA other upstream 1249685 170521 ~ 225245 (+)
G152451 NA other downstream 1263526 2761594 ~ 2762939 (+)
G153475 NA other downstream 2047057 3545125 ~ 3562004 (+)
G153790 NA other downstream 3235521 4733589 ~ 4740107 (+)
G154587 NA other downstream 3772952 5271020 ~ 5271535 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017525 ehd3 coding NC_007131.7 CM002904.2 38201644 ~ 38241859 (+)
bowfin (Amia calva) AMCG00003428 ehd3,LOC108429356,LOC107727655 coding CM030121.1 CM030121.1 2842040 ~ 2854548 (+)