XLOC_017525 (ehd3)


Basic Information

Item Value
gene id XLOC_017525
gene name ehd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38201644 ~ 38241859 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034826
GTGGGGCTTTGCCAGTGGGACATTTCCTCTGGTGTCGGGTTTCTCCAGCGCACTGGCATTTAAATCTGCGGCAGTGGGAAGCCTGTGAACGCCTGTCAACGTGACTGAATCTGCTCTGCTGGAGGATTTGCCGCTcgttttcttttctctttcacAACTGCAACATTTGTCGCGGTCGCTGAATGAGGCATTGTCGAGTGTTGCGGCGCGCGCTTTTATTCCAACAATAGCCTCAATTAAAGGCTGCCGCTCTGGCCATGTTTTGATCGTGAAATATCAGCATTATATTATGTAATAAGTTTCATTTTGTAATTATGATTTAGTCTTTTGTGCATTTTGTGTCGTGAGTGGCCTGCAGACAGGGGAACATTTTCAATGGACATTTAAAATACGTCGACGTCAGAAAAGATCCATTCATTCGAAAACACTACAGTCGGCGAGTTTGTGCGTATTTGTGGAAAAATTGTCcaagtaaataaagaaatattgtaGAAAGGCTGTATATATTAGAGTTGCATCATGTTCAGCTGGTTGGGTACCGATGACAGGAGGAAGAAAGATCCAGAGGTCTTCCAGACTGTCAGTGAAGGACTCAAGAAGCTCTACAAAACCAAACTGCTTCCTCTTGAGGAACACTACAAATTCCACGAGTTTCACTCACCCGCGCTGGAGGATGCAGATTTTGACAATAAACCCATGGTTCTCCTTGTGGGTCAATATTCTACCGGCAAAACCAGCTTTATAAGataTCTTCTGGAACAAGATTTTCCTGGTATGCGGATTGGTCCAGAACCCACGACGGACTCCTTTATAGCAGTGATGCATGGCACCATGGAGGGACTAATACCAGGAAACGCTCTGGTCGTAGATCCCAAAAAACCCTTTCGGAAACTCAACGCCTTTGGCAATGCCTTCCTTAACAGGTTCGTGTGCGCCCAGCTTCCCAACCCGGTTTTGGAGAGCATCAGTGTGATTGACACTCCAGGAATCTTGAGCGGAGAGAAACAAAGGATCAGCAGAGGCTATGACTTCGCTGCGGTGTTGGAGTGGTTCGCCGAGCGCGTAGACCGCATTATCCTCCTTTTCGACGCCCACAAGCTGGACATCTCAGATGAGTTTTCAGAGGTCATCAAGGCCCTAAAGAACCATGAAGACAAGATCCGTGTGGTGCTCAACAAGGCCGACCAGATCGAGACACAGCAGCTGATGCGAGTTTACGGCGCCCTCATGTGGTCACTGGGAAAGATCGTAAACACGCCGGAGGTGATTCGTGTCTACATTGGCTCTTTTTGGTCGCATCCATTGCTGATTCCAGACAATCGCAAGCTGTTCGAAGCAGAGGAGCAAGACCTGTTCAAGGATATACAATCACTTCCTCGCAATGCCGCTCTTCGCAAGCTCAACGATCTGATCAAGAGGGCCCGTCTGGCTAAGGTCCATGCATACATCATTAGCTCCCTGAAGAAAGAGATGCCCTCAGTCTTTGGGAAGGACAACAAAAAGAAGGAGCTGATTAACAGCTTGGGTGAGATCTACAGCCGCATTGAGAGGGAACACCAGATTTCCCCGGGAGACTTCCCTAATCTGAAGAAAATGCAGGAGCAGCTTCAGGCACACGATCTAAACAAGTTCCAGCCTCTAAAAATGAAGCTTTTGGACACTGTGGATGATATGCTGGCCCATGACATCGCCCAACTTATGGTTCTGGTGCGCCAAGAAGAAACGCAGCGTCCTAACCAGGTGGTGAAGGGTGGTGCTTTTGAGGGCACCATGAACGGGCCGTTTGGACATGGATATGGTGAGGGAGCTGGAGAGGGCATTGATGAAGTAGAATGGGTTGTGGCACGTGACAAACCCATGTATGATGAAATCTTCTACACTCTCTCGCCTGTCAATGGCAAAGTGACTGGGGCCAATGCCAAGAGGGAGATGGTGAAGTCCAAGCTGCCAAACACTGTGCTGGGAAAGATCTGGAAGCTGGCTGACATTGATAAAGACGGGATGCTCGATGACGAGGAGTTCGCCTTGGCCAACCATTTAATTAAGGTCAAACTTGAAGGTCACGAGCTGCCAAGTGATCTGCCCGGGCATCTCGTGCCTCCCTCCAAGAGGAAAGTTCCAGAGTAAGATTTCGGAGTGAATATAGTGGATTTAGATTGCTTTTAAATTGTGAATGATTGGACTTTATTATAggaaaagaacaaacaaacttcCTTCAAATGTATGGTTTATGCTTCACTAGGAGGAATGGATTTGAAAATGATCCACCTTTTCAACTCTTTTGAcctgtgtatgtttttattttgattttgattttagttttagtttctttttttatgaatGATATTCTTGTCAGCAGtgtgtttaaaatcattttgcgTGTGCTTTTATGGATTTTACAGTCAAAGGTTTTGTCGTTATTTCAGTTTCATCTGTTGTGACTCGGAATATGGTGTCCTAACAAAATGTTAATCAAAACAATAACTAAAGCCAGGCTTAGACTGCTGGAGTTTTTCAATCTAAACCGATTATGAAATCTGATTATATCTTCATAATTTCCCTTCAAATTTCAAACATGTGCCCGCTATATAATTGGAAAATCATGGTATGTATACATACaccgtaaaacccaacagtcaactttatcaagtgAAATGAGTGTAATGAACTCCAAATTTGC

Function

symbol description
ehd3 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in ciliary membrane and endosome. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye; neuromast; photoreceptor cell; and retina. Orthologous to human EHD3 (EH domain containing 3).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006897 endocytosis biological_process
GO:0016197 endosomal transport biological_process
GO:0032456 endocytic recycling biological_process
GO:0060271 cilium assembly biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005769 early endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041014-352 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in ciliary membrane and endosome. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye; neuromast; photoreceptor cell; and retina. Orthologous to human EHD3 (EH domain containing 3).

Ensembl:

ensembl_id ENSDARG00000007869

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034826 True 2680 mRNA 0.45 6 38201644 38241859

Neighbor

gene id symbol gene type direction distance location
XLOC_017524 NA coding upstream 63221 38128054 ~ 38138423 (+)
XLOC_017523 galnt14 coding upstream 81754 38031439 ~ 38119890 (+)
XLOC_017522 vash2 coding upstream 285122 37866171 ~ 37916522 (+)
XLOC_017521 flvcr1 coding upstream 339109 37844035 ~ 37862535 (+)
XLOC_017520 NA coding upstream 359638 37836126 ~ 37842006 (+)
XLOC_017526 ccl38.6 coding downstream 15907 38257766 ~ 38291952 (+)
XLOC_017527 ccl38a.5 coding downstream 37664 38279523 ~ 38280392 (+)
XLOC_017528 ccl38a.4 coding downstream 43812 38285671 ~ 38286553 (+)
XLOC_017529 stum coding downstream 80585 38322444 ~ 38359333 (+)
XLOC_017530 NA coding downstream 131813 38373672 ~ 38447247 (+)
XLOC_017515 NA non-coding upstream 596519 37495088 ~ 37605125 (+)
XLOC_017511 BX855623.1 non-coding upstream 920862 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 994271 36925790 ~ 37207373 (+)
XLOC_017534 NA non-coding downstream 348649 38590508 ~ 38598879 (+)
XLOC_017538 BX511178.1 non-coding downstream 533113 38774972 ~ 38775087 (+)
XLOC_017541 NA non-coding downstream 806200 39048059 ~ 39195117 (+)
XLOC_017544 AL845306.1 non-coding downstream 1090110 39331969 ~ 39332092 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_01475527_01497973 EHD3 coding CI01000029 null 1474930 ~ 1498068 (+)
bowfin (Amia calva) AMCG00003428 ehd3,LOC108429356,LOC107727655 coding CM030121.1 CM030121.1 2842040 ~ 2854548 (+)