XLOC_017522 (vash2)


Basic Information

Item Value
gene id XLOC_017522
gene name vash2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37866171 ~ 37916522 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034819
CAATAACAGTATCAAAAACGCTAGAGTGAGTGACCATTTGTTGAGACCGTCGGTGAACGCGGCAACACGCCTACATGGGAAGATAAATCATTCATTGATACTTTACAATCAAATGTTAAATTGATTATACAGCCCGTGTTTCCTCTTCGGCAGTCGGACGCCTCCTCGGTGTTTTTAACCAAAGAACGATTAATTTAGTTCCTGCGGAGATCCGAAGCTGAACGCCAAACTACAATATGCAGCTTATTgggaataaatgacattttctgaATTTCATCTCCTCTGCACGCACCTTCAGCCATTGGTTTCTACAGAAATGGTACCTAAAGCCATTTTTTCTATCCTTGGATCCTCTCTAAGCCACCAAAATTTTTACACTTGAGCAGAACTGAGAGGTTTTGgcacattaatatgcatgctcGGGGCGCAACATGTCTTTGTACATGAATGCTGGGCGATCATAAGTGATTTGgggaacagcaagaggaacccccACCATCGGAAGACTTCTAACAATGACCGGACCAAGCGCCACCAGCAGCGGCTCCGCGGCCAAGATCAGTAGACACGGACGGTCCAAAAGCACCAGTGCATACTGTCACAGCACGGGTCCTGCTGCTGAATCCTCCCCGTCCACTGCCGCAAATAACACCGGCAGGTCGTCCGGCGAGGAAGAGGAGAAAGACGGCGGGGTCCCGTTTTTCGTCAACAGGACGGGCTTTCCCATAGAGAGTGTCACCTGGGAAAGAATGTGGTCTCATGTCGCCAAAGTTCACCCTGATGGACAGGAGATGGTGGACAGAATACGAAATGCAACACTCCTCCCTAAACACTCCGTGCCATCAGTTCCTAACTTTAAGCCATCAATGTCTGTGCCTGATTGGCTCCATGCCGTCCAGAACTACATGAGAAACCTGCAATACAACCATACGGGAACGCAGTTCTTTGAGATTAAGAAAACCCGACCTCTGAGTGGgTTGATGGAGACTGCGAGAGAGATGATACGAGAATCCCTTCCCATCAAATGCCTTGAAGCAGTTATCCTTGGGATCTATCTAACCAACGGTTTAACTTCTGTGGAACGGTTCCCTATCAGCTTTAAAACCCAATTCTCTGGGCACCACTTCCATCACGTGGTGTTGGGCGTTTACTGTAACGGCCGCTATGGCACCCTGGGCATGAGTCGACGTACTGACCTTATGGACAGATCTCTGAGCTTTCGTACACTCAGCGAGTTGGTGTTTGACTTCGAGGACTCGTACCGCCGCTACCAGCACACCATGAAGAAGATAAAGATTGGTCTATATGTACCGCATAATCCACATGTTTTCCAGCCTATTGAGTGGAACTATCTGGTGATAAATGCCAGTAAGCAGGGCCGTGAAGACATGCGTAAAGAGCTGGAGAAGCATGGACGTGACATGAGGATGAAGATTCTCAAGTCGTCCAGTGCTCAGTCTCCAATCAAAGAACGAACTCGAGGCAAGTCTTTATCACCACGCCGCCGACCAGGCACCAGTCCCCAAAGACGCCAACATGCCCACAGAAGAGACAAATCGTAAGCCAGCAGCACTGGACAGAAAGCCAGCAGAGCTCAGCACCCTCAGCGACGGCTACCAGATCCGCATCTGAGACCCTACAGCACTGATGTAACAGCTTTATCCTCCACACGTCCTCCCGCAGTCAGTTATTTAATGCAAATTGTGaactgtacagtatatttatCCTATTTTTAGTTCTGCTTCTGTGTAAAAGGGAAATTGGGTGCCCTTCTCAAATTTAAAAGTGAttcaaaaaaggttttaaacaagATAAGACATTCGTTTTAAGCCATAAAATGTTGAAATAGTTCATAATTTAAGTAGAATTGAACCAAATTTCTTGCTGAAGAATATTTTTGTACCCTAATAATGCTCAAGTATTTTAGAAAGCTTAAAAGTGTGACTGACAAAAATATTCACGCAAATGTGGGGGAAAACTCTATTTTTGGACAGATCGTCACTAGCTGTGAGAGCTGGAGTGTGATTGGATTGTGTTTGGCAGAGAGATGTGAACCTCGGTGCCTCACTATTGGTAGTTTTGGAGACTGACTGTCAAGAAGCTATTTAGCCAGAGGCGTAAGGACACGAGGGACCAGAGCATCAGAGAATCCGCCATTCTGCCCACAAGAACTATGTTCAATACACTTCCTTTTTGTTGATGTTACCTCCACACACCTGTAATATGGATGGAAAGAACATGTTTTATTGATCTTTATTGAAGGTTTGAGGCTAACATACATTGATaggttttgtatgtttttttcttatacaatatCATGGTAGTGGTTGTAGatgaactttttattatttaaatgtttttattatttatcattttttcgCTATtgtttttaacgttttttttaaGCCAGTACAGTATTTTGCGGTTCtgtgcattttcattttacttttcTTTTGATGAAGAAACTCTCAGAGGTGTGAAGGTTGAAGTGCTGTCCACTGCAAATAATCCTGAAAGTttcacatattcatttaaattttatattttctaattaCTTTTTATGCGGCAGTCAGGAACCACATTGTTAATGACTATAAATCAGAGGGTTTTTACAAAGCCCCTAAAGCAGGGCTGCCCAAATTCGGCcttggagggctggtgtcttgcAGACTTTAGCTTTAACTTTCCTCAagacacctgcatggatgtttctagaaagcctagtaaaagaTTGATTTgctagctcaggtgtgtctgatttgggttggaactaaactttgcagtacaccgaccctccaggattgagtttgggcacccctggcctAAAGGGACATGGTGATAGGAAAAAATATACTTCAGTGTTTTTGTGTTAGCTTGCAAAACTGAGTGAATGCAAATTTGGAGGGGGAACAATTTTCAAGTGTATTTGCTAGTAAATGTGGAACCCTGTACTTTTGTCAAGTTTTGCAAGGAATTGCAAAGATATTAAAGTATcatcagggtgcgaattacaggggggtttgacccccctaattaacacttgatcccccctgaaggacatcaaagcAAGATGTATGGGGTAAGGGTTAGCCCTTTAATAGTAAGAAATAGCTTTCTCTGATCTCTGATttatatcttaaatattaataattaaaaatgtataatataactaTACATTTGACACCCCATAATGATTCATACCTTTGGAAATGCATAATCGTGCTAATCAATGCTAGGAAAAATACGATTCAACAGTCTGAAATTGGCAGTTCGCAAGCACCAATAGACACCTTAAATATTCACAAAACATGCTTCTTGTAAAATAGatgtttatatctgcatgtagcctaaaaaatgtttaatttagacataatttgtatagtttgaccgaCAGTAACGTCTAAAATAGTCACGAAATATCCCCCAAAATGCTAAAAATGGGTACATTTTATCAATAAATGTgatataatttaaatacattagtAAATTTGATTCAGCGAAGCATGCATTACCAAACTACTACAGAAAAAGTTGACCCCCTGATCGTCAATGTCTAATTCGCACCCTGAGTATCATGTTATATCGAATACTATAGTTCAATGCTTTTTTACTGATTGCCAAGTTTTGTGAAATAAAACACTGAGACTGAACTCAATAGTTTTGCGTGggaatgcagtgtttctcaaggGAATGAAATGCATTGAaatttaatttttagattttaaagtgGGAGGAAAAGCTATATTTAAAACTTATTGTAGTGAAGGCAAAGCTTCAAGAGGAAATAAAAGTAAAGACACACTAAAAAGAGGGTAAAATTGTAAATGCAAAGGATCTTGGAGGAATTACCACTATATGAAACTTGAAAACCTTCTTGGAAAACTGTGAAGCATTGAAATATAAATTCCTCACTTCATTTTTTTCTATCCTCATGTCCTCTTAATTCCAAAGTAAACTTCTGTTTTATGCATATGTGAGGGTCTGCTTACAGTGTGCTTGATGTGAATTTCGCCATTTGAGCAGTATGCACGATACTTTACACGCAACAGTATGATGAGAAATATAACAGCGCATTCACTGAGCACCAATATTCGCAAACATCATTAAATGAAGTCTACTTTCAAAGGTGCGTTTGACTACACCATTGCTAACATATGCATAGACTAATAGGATATCATCTCTTAATCAACAGCATATCACTTCAAACTTTCCCACCTCATGAGAATAAGCTATGCACATGGAGCAGATCTGCGCTATGATCTGTTTTGCTCAACAACAGacctatttttaaaattgtagcaGTGACATTGTTACTAAGTCTTTGTGGGTTGTGCGAGTGGTTCCTCTCTGAGCGTTGTTTATTGAGTGCTGTTGACTAAACTACCACATTATAGCTCATTCTGCCTTGTTATTGGTACCAGCTTTCCTATTAGAAGCTATCGAACCACACAAGTGCCAGACCACTGAGTACGTCAAACTCATCCTTAAGGCTGAGGGTTTTATCTCAGTCACATGAAGATAAAAAAAGGTCATGAGTTTCAGTGACATATCTAATGTTGAATTGTTCAGACTCTTTATGGGAGAGAAGGGgtctgctgcttttttttttttttggtatgtgAAGAACATCACAttgttacagatttttttttatcatttataacttGCTGTTTGGAAACTTATTGTGTGAAATTGAGTGGAAAAAGTAAAAAGCAGTAGTAAAAGCATTCAAGTTTCTGGTTTTAAAGAAATGCAGTGATCTCCCCTTAAAGGTGCTAAGATGAGACATTTTACCCATATTGTGAAAGTCAATATTTTAGCTTTTGTATGATTAAAGAGCACATTAATCTGGCTTCTGTAGCACAGTGATGGAACTGCAACAAGTTTAATATTACACATCACCAATATATATTCACAGGTGATGTAAGTAATCAGATTATAGATGCTTTTGTGGAATGTTTGTTTCCATGTCTGAAAATACAATCAGTTTGAATGACAAAATAGTTTAATCCAATTTTATGGGAAATGTTTTTCTCAGTAAGAATGTTAAAAATGTGACTTTATGAAGATCTCACTACTTCAAGCCTATCCTGAGTTTcctgtgtatttaaatgtatcaCAAAAATAAGGACTTTATAAAATAAGTGACCCTCAACATATTTTCCTAAGCCTTGCAACATAAATCCTCTTTTCTGTCTGAAATTTGTGTTTCTGGGTCACTTCCATTTCCTCATAAGCAAACTTGTTCACCCTCAGTagcatgttttaataaaacaagttttttCTGTGATGGAA
>TCONS_00034820
GGGCGATCATAAGTGATTTGgggaacagcaagaggaacccccACCATCGGAAGACTTCTAACAATGACCGGACCAAGCGCCACCAGCAGCGGCTCCGCGGCCAAGATCAGTAGACACGGACGGTCCAAAAGCACCAGTGCATACTGTCACAGCACGGGTCCTGCTGCTGAATCCTCCCCGTCCACTGCCGCAAATAACACCGGCAGGTCGTCCGGCGAGGAAGAGGAGAAAGACGGCGGGGTCCCGTTTTTCGTCAACAGGACGGGCTTTCCCATAGAGAGTGTCACCTGGGAAAGAATGTGGTCTCATGTCGCCAAAGTTCACCCTGATGGACAGGAGATGGTGGACAGAATACGAAATGCAACACTCCTCCCTAAACACTCCGTGCCATCAGTTCCTAACTTTAAGCCATCAATGTCTGTGCCTGATTGGCTCCATGCCGTCCAGAACTACATGAGAAACCTGCAATACAACCATACGGGAACGCAGTTCTTTGAGATTAAGAAAACCCGACCTCTGAGTGGgTTGATGGAGACTGCGAGAGAGATGATACGAGAATCCCTTCCCATCAAATGCCTTGAAGCAGTTATCCTTGGGATGTATCCTTTAGCTTTAAGGACAGAATTTTGTCAAATATTCACATAAATTCTCtcaattgttataaaataaaaatgtttttcattaattgaattatagtat
>TCONS_00034821
ATGACCGGACCAAGCGCCACCAGCAGCGGCTCCGCGGCCAAGATCAGTAGACACGGACGGTCCAAAAGCACCAGTGCATACTGTCACAGCACGGGTCCTGCTGCTGAATCCTCCCCGTCCACTGCCGCAAATAACACCGGCAGGTCGTCCGGCGAGGAAGAGGAGAAAGACGGCGGGGTCCCGTTTTTCGTCAACAGGACGGGCTTTCCCATAGAGAGTGTCACCTGGGAAAGAATGTGGTCTCATGTCGCCAAAGTTCACCCTGATGGACAGGAGATGGTGGACAGAATACGAAATGCAACACTCCTCCCTAAACACTCCGTGCCATCAGTTCCTAACTTTAAGCCATCAATGTCTGTGCCTGATTGGCTCCATGCCGTCCAGAACTACATGAGAAACCTGCAATACAACCATACGGGAACGCAGTTCTTTGAGATTAAGAAAACCCGACCTCTGAGTGGgTTGATGGAGACTGCGAGAGAGATGATACGAGAATCCCTTCCCATCAAATGCCTTGAAGCAGTTATCCTTGGGATCTATCTAACCAACGGTTTAACTTCTGTGGAACGGTTCCCTATCAGCTTTAAAACCCAATTCTCTGGGCACCACTTCCATCACGTGGTGTTGGGCGTTTACTGTAACGGCCGCTATGGCACCCTGGGCATGAGTCGACGTACTGACCTTATGGACAGATCTCTGAGCTTTCGTACACTCAGCGAGTTGGTGTTTGACTTCGAGGACTCGTACCGCCGCTACCAGCACACCATGAAGAAGATAAAGATTGGTCTATATGTACCGCATAATCCACATGTTTTCCAGCCTATTGAGTGGAACTATCTGGTGATAAATGCCAGTAAGCAGGGCCGTGAAGACATGCGTAAAGAGCTGGAGAAGCATGGACGTGACATGAGGATGAAGATTCTCAAGTCGTCCAGTGCTCAGTCTCCAATCAAAGAACGAACTCGAGGCAAGTCTTTATCACCACGCCGCCGACCAGGCACCAGTCCCCAAAGACGCCAACATGCCCACAGAAGAGACAAATCGTAA
>TCONS_00034822
GGGTCCCGTTTTTCGTCAACAGGACGGGCTTTCCCATAGAGAGTGTCACCTGGGAAAGAATGTGGTCTCATGTCGCCAAAGTTCACCCTGATGGACAGGAGATGGTGGACAGAATACGAAATGCAACACTCCTCCCTAAACACTCCGTGCCATCAGTTCCTAACTTTAAGCCATCAATGTCTGTGCCTGATTGGCTCCATGCCGTCCAGAACTACATGAGAAACCTGCAATACAACCATACGGGAACGCAGTTCTTTGAGATTAAGAAAACCCGACCTCTGAGTGGgTTGATGGAGACTGCGAGAGAGATGATACGAGAATCCCTTCCCATCAAATGCCTTGAAGCAGTTATCCTTGGGATCTATCTAACCAACGGTTTAACTTCTGTGGAACGGTTCCCTATCAGCTTTAAAACCCAATTCTCTGGGCACCACTTCCATCACGTGGTGTTGGGCGTTTACTGTAACGGCCGCTATGGCACCCTGGGCATGAGTCGACGTACTGACCTTATGGACAGATCTCTGAGCTTTCGTACACTCAGCGAGTTGGTGTTTGACTTCGAGGACTCGTACCGCCGCTACCAGCACACCATGAAGAAGATAAAGATTGGTCTATATGTACCGCATAATCCACATGTTTTCCAGCCTATTGAGTGGAACTATCTGGTGATAAATGCCAGTAAGCAGGGCCGTGAAGACATGCGTAAAGAGCTGGAGAAGCATGGACGTGACATGAGGATGAAGGTGAAGCACATTATAAACTATATTTGATTCTATTATAGAttctatttatgttttaaatttgatttgattggTACATCCACTGTTTTAAGTAGTTTTAAGATTgcttatattaaaatgtttatttgatttgaatATATTAAACCTATTAACATATCTGCCATA

Function

symbol description
vash2 Predicted to be involved in regulation of angiogenesis. Predicted to be active in cytoplasm. Is expressed in musculature system; pharyngeal arch; segmental plate; somite; and telencephalon. Orthologous to human VASH2 (vasohibin 2).

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-355 Predicted to be involved in regulation of angiogenesis. Predicted to be active in cytoplasm. Is expressed in musculature system; pharyngeal arch; segmental plate; somite; and telencephalon. Orthologous to human VASH2 (vasohibin 2).

Ensembl:

ensembl_id ENSDARG00000007774

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034819 False 5295 mRNA 0.39 7 37866171 37916522
TCONS_00034820 False 699 lncRNA 0.48 4 37866623 37884806
TCONS_00034821 False 1047 mRNA 0.51 6 37866686 37899313
TCONS_00034822 True 905 mRNA 0.44 5 37866861 37896526

Neighbor

gene id symbol gene type direction distance location
XLOC_017521 flvcr1 coding upstream 3636 37844035 ~ 37862535 (+)
XLOC_017520 NA coding upstream 24165 37836126 ~ 37842006 (+)
XLOC_017519 tatdn3 coding upstream 38788 37820990 ~ 37827383 (+)
XLOC_017518 atf3 coding upstream 65434 37794633 ~ 37800737 (+)
XLOC_017517 pex3 coding upstream 96868 37760493 ~ 37769303 (+)
XLOC_017523 galnt14 coding downstream 114917 38031439 ~ 38119890 (+)
XLOC_017524 NA coding downstream 211532 38128054 ~ 38138423 (+)
XLOC_017525 ehd3 coding downstream 285122 38201644 ~ 38241859 (+)
XLOC_017526 ccl38.6 coding downstream 341244 38257766 ~ 38291952 (+)
XLOC_017527 ccl38a.5 coding downstream 363001 38279523 ~ 38280392 (+)
XLOC_017515 NA non-coding upstream 261046 37495088 ~ 37605125 (+)
XLOC_017511 BX855623.1 non-coding upstream 585389 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 658798 36925790 ~ 37207373 (+)
XLOC_017509 NA non-coding upstream 955220 36860737 ~ 36910951 (+)
XLOC_017530 NA non-coding downstream 457150 38373672 ~ 38447247 (+)
XLOC_017534 NA non-coding downstream 673986 38590508 ~ 38598879 (+)
XLOC_017538 BX511178.1 non-coding downstream 858450 38774972 ~ 38775087 (+)
XLOC_017541 NA non-coding downstream 1131537 39048059 ~ 39195117 (+)

Expression


Co-expression Network