XLOC_017517 (pex3)


Basic Information

Item Value
gene id XLOC_017517
gene name pex3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37760493 ~ 37769303 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034812
AGACTCTATCTGTTATCTGCAGTTAGCCTGTCTGCAGCTAACATGAGAACTTATTGCCATGTAGCATTGTGCTAGCTAGTGAGTTACGTCTAAACCCGCTCTTGCTTctcttatttcttttcattttcggTGTCAAGTCTGTTAAAATGTTGAGTTCTACATGGAATTTCATCAAACGCCATAAGAGGAAATTCATCTTCACTGGGGTGTTTGTTGGAGGTGTTTATCTGCTTGGTAAATATGCACAGAGAAAAATTCAGGAGATGCAGGAGCGAGAGGCAGCTGAATACATTGCTCAAGCTCGGAGACAGTTTCATTTTGAAAGCAACCAAAGGACATGCAACATGACAGtgTTATCAATGCTCCCCACTCTCCGAGAGGCAATCATCCATCACCTGAACTCAGAGAGTCTCACTGCTTTGCTGAAGACTAAGCCAGCAAATAAACTTGAAATCTGGGAGGATCTAAAGATTATAAGTTTTACCCGCAGCATTGTAGCCGTTTACAGCACCTGCATGCTGGTTGTGTTACTCAGAGTTCAGCTCAACATAATCGGTGGATATCTGTACCTAGATAACTCTGTGACGAAAAATGGAATGACCCCCTTAGCACCACCTGATGTTCAACAACAGTATCTTTCCAGTATCCAACATCTTCTTGGAGAAGggCTCATGGAACTGATAACTGTGGTCAAGAAAGCTGTTCAGGAAGTTTTTGGACTGGTGTCTCTGAAGCAGAGTTTGTCTCTACAAGAGCTGGAGCAACAGTTGACACAGATCAGACAGTTAGTGGAGGACGACTCCTCTAAATACAAAAGTCTTTCCTGGTACATGATGCCTGATGAAGAGAACACACTTGCCTCACAGGCCTGTGGTCTCACAGAGAATGATGTCACAACGATAAAGCTACTAAATGAAACCAGAGATATGCTGGAAAGTCCAGACTTCAATATTGTTCTTCACACTTGCTTGAATCGAGGATTTGTCAGATTTCTAGACAACATGGCAGAGTTTTTCCGACCCCCGCAGAGAGACTCCACTCCCTCCAGCACACCTGACCAACTATCGCATGTAAGCCTCCCACTAGCCAAAATCATTCCCATTATCAACGGACAGATTCATTCAATATGCAGCGAAATTCCAAGCCACTTTGTTCAGGATCTCCTGTTGATAGACCAGGTAAAAGAATTTGCCGCCAACGTATACGAAACCTTCAGCACCCCTCAGGAACTTCAGAAGTGAGCAAGACATAAAAGCAAAACTCCTAGAAATCTCTCATGCCGTACAGCACAGAATTGCTCTCCTCACGCGCCAAAAAAATCAACctggagtgaaaaaaaaaacttgaatcaAGTTCTAAGTGTGTGTTAAAGGAGTTCAGATTCACTGTTGTTAGTAGGCATTCAGTTTGGAGTAGCTTTAGCTGACCCCTCTGTATGCTGTGACCCTCTTAACATTGTCCAGGGCATGCCAAGGTTTGTAGTCTATAATAAACTGtagcacattatttatttatattttaataaaacaaacccCTTTAGCATAACATTGTCATTAATATCAcaaataaaaaggaaaacaacTTGTTCACCGGACTCAATTCTGACAGCCTTACATCTGCAGTATGGACTTAAATGGGTGAATTGTGGTCATTTTGtatattatatcaatattataCCTGAGGTTGCAGCTTCTGGACCAAAACTCACCTTTGCACCAATAAACTGCTAAGCACATGgatatttgggagcatttttgTTTGTATCGACTTTCATTTTGAACGGCTCTACTACTAACTGATGGGAATCATTTGCAAAATGGTACAGTTCGTAGTATGCTCTtctgttttttttgtaaaatgaccCATGAAtgttaatgaataataatgtgagTAATATTATCGGAACTATTCATTAAAATGAAACACTGTTTGACTCTA
>TCONS_00034813
ATTTAACTGAATAGTTCTTGCTTGCAGCATATCACTTTGTTAACATGGATGCTATACTATATTGTAATCTCAAACTTTTTATTTGCAGGTGTTTATCTGCTTGGTAAATATGCACAGAGAAAAATTCAGGAGATGCAGGAGCGAGAGGCAGCTGAATACATTGCTCAAGCTCGGAGACAGTTTCATTTTGAAAGCAACCAAAGGACATGCAACATGACAGtgTTATCAATGCTCCCCACTCTCCGAGAGGCAATCATCCATCACCTGAACTCAGAGAGTCTCACTGCTTTGCTGAAGACTAAGCCAGCAAATAAACTTGAAATCTGGGAGGATCTAAAGATTATAAGTTTTACCCGCAGCATTGTAGCCGTTTACAGCACCTGCATGCTGGTTGTGTTACTCAGAGTTCAGCTCAACATAATCGGTGGATATCTGTACCTAGATAACTCTGTGACGAAAAATGGAATGACCCCCTTAGCACCACCTGATGTTCAACAACAGTATCTTTCCAGTATCCAACATCTTCTTGGAGAAGggCTCATGGAACTGATAACTGTGGTCAAGAAAGCTGTTCAGGAAGTTTTTGGACTGGTGTCTCTGAAGCAGAGTTTGTCTCTACAAGAGCTGGAGCAACAGTTGACACAGATCAGACAGTTAGTGGAGGACGACTCCTCTAAATACAAAAGTCTTTCCTGGTACATGATGCCTGATGAAGAGAACACACTTGCCTCACAGGtagatatatatgatataatttaTACATAATTTCTTaattgcatacag

Function

symbol description
pex3 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be integral component of peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 10A. Orthologous to human PEX3 (peroxisomal biogenesis factor 3).

GO:

id name namespace
GO:0007031 peroxisome organization biological_process
GO:0045046 protein import into peroxisome membrane biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function

KEGG:

id description
ko04146 Peroxisome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-979 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be integral component of peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 10A. Orthologous to human PEX3 (peroxisomal biogenesis factor 3).

Ensembl:

ensembl_id ENSDARG00000013973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034812 False 1938 mRNA 0.41 12 37760493 37769303
TCONS_00034813 True 783 lncRNA 0.41 7 37760996 37764652

Neighbor

gene id symbol gene type direction distance location
XLOC_017516 aig1 coding upstream 23790 37661229 ~ 37736703 (+)
XLOC_017515 NA coding upstream 155368 37495088 ~ 37605125 (+)
XLOC_017514 adgrg6 coding upstream 290853 37383034 ~ 37469640 (+)
XLOC_017513 vta1 coding upstream 380915 37300296 ~ 37379578 (+)
XLOC_017512 cx23 coding upstream 462219 37294112 ~ 37298274 (+)
XLOC_017518 atf3 coding downstream 25330 37794633 ~ 37800737 (+)
XLOC_017519 tatdn3 coding downstream 51687 37820990 ~ 37827383 (+)
XLOC_017520 NA coding downstream 66823 37836126 ~ 37842006 (+)
XLOC_017521 flvcr1 coding downstream 74732 37844035 ~ 37862535 (+)
XLOC_017522 vash2 coding downstream 96868 37866171 ~ 37916522 (+)
XLOC_017511 BX855623.1 non-coding upstream 479711 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 553120 36925790 ~ 37207373 (+)
XLOC_017509 NA non-coding upstream 849542 36860737 ~ 36910951 (+)
XLOC_017508 NA non-coding upstream 909197 36845114 ~ 36851296 (+)
XLOC_017524 NA non-coding downstream 358751 38128054 ~ 38138423 (+)
XLOC_017530 NA non-coding downstream 604369 38373672 ~ 38447247 (+)
XLOC_017534 NA non-coding downstream 821205 38590508 ~ 38598879 (+)
XLOC_017538 BX511178.1 non-coding downstream 1005669 38774972 ~ 38775087 (+)

Expression


Co-expression Network