XLOC_017530


Basic Information

Item Value
gene id XLOC_017530
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38373672 ~ 38447247 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036643
ACTGGATTAAGCCAACAAGCCCTCGGTTTGTAATGCTAATTGCTAACTTCATCCTTTTGATTGACTCCTGAAGATGAATAAAATCTACGAAAACATCAGAAAATCATGGTTCAGCCAACTAAAGTCAGAGAAAAAAGTCCATCTGACAGCAGGACACAGAAGTACCTTTGTATGTGAGAATGTCAACAGTTACTCAGGGTGAATACAGACGAGCCCAGAGCAGGAAAGCACAAGGACAGTGTAAAAGCGCTGAAGGATGTCGAGAATACACAACATGAATTGTGGGACTGTACAAGCTATCAAATCAAGAAAGGCTGGGGACCGCTCTGGGTCGCTGGAGATGTCGTCCTCTGATTCCTCCCAGGAAGAGGAAAATCCCGTTGATGAGGCAGAAGAGGAGGAGAGCTTCCTCAGGGTTCTGTTAGTTTGAGGACTAACCTCAGCCTCTTTTACCTCCCCACTGACCTCCATACCGTCGTCCGTAATAATGACAGTGGGGATGGAGCCTAACTCTGGACTAACTCCGTCAGGCTCTGCCTGGGTTGTTGGCTCAGCTCCTGGCTTTGTCAAACATGTCTTGGTCCAAGATGCTGAGCAGTCATTGGCCTCTGATAAAGTCCTGGAGTGATTGTCTGTAAGGCTGTCAGCATCGCTCTTAGTTCCAGCTGATGTGCTCTTATGTGGGCCGCCCTCTTCTGTATTTGGGTCGGCCCCATCCTTCTCTTCACCGCTGACCTGCAGCCCCTCCTCCGTGCCAGAGAAGCGCTTTCCATTTTGCAGTTCTTTGGGGATCCCCGTTGAGTGATCCTTGTTTCGTGTTGCAAGTGTTTCCTCTGGGTTCAAGCTAAGGTTGGTAAGTTGGACAGGGGCAAAATAATGAGGAGATTTTCTAGAAATCCTTGGGCTTCGCTGAACCTCTCGACTGAAAGCCTGAGCTGATATTTGGGCTTCAAACAGGTCCACCTTCTTGTTCACCCCCACATTCTGCAATTCCCTGTTGCGTTCAAGTTGCAGAGCAACACGTCGCTCTTCGTTCTCCTGTTCTTCCTCCAGACCTGACCCACTGAGTCTGCGCACACGACTTCCCACATGCACACCCAGCGATTCTGGCCTTCGACATGGTGAAAGTGCTCTTTGACAACTGGAACCAGTACTTGTTGGGAAGACAAATGACTTTCCTGAAGAGCCAGGGCTCAGGCTGCCTGGGCTATAGGGACTTCCGCTGCCCCCCAGAGGTGGGCTGAATGTTGAACGACTAGGTACTGGGAGCACAGGCCTTCCTGTCCGAGGGCTGTTCTTATTGGTCAGGTTGTTAGGGTTCATCATTATCAAGCTGTTCAGAGCATAAGCTGCCATAATGGCAGGCTAGACCTGTCCGTTTTTGCTCCCATTTAGGTTTATTCATCCAAGATCCACTGGCCTTTGGACCTAACCATCATTGGGAGGAACTAAAGGAAAACTGATATGTAGAATACTAAAATACAATCCTAGACTCCTTTCCTCGTTTACATATTATATGCACCACTGGTTCATCCTTAGCCGAGTTCTGAAAAGAAGCACAAGAGATGTAAAAAGCATATGCTCTTAATATTTGAAGTACTGTTGTGCAAAAAGTGAATATGATGGATGTTATAACAAGAAAGACTACCTGAATAATTtcaataaatgtaaatgcatttcaGAAATGCAAAAGTGCCTTGGGTTGATTATTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036643 True 1712 lncRNA 0.47 3 38373672 38447247

Neighbor

gene id symbol gene type direction distance location
XLOC_017529 stum coding upstream 14339 38322444 ~ 38359333 (+)
XLOC_017526 ccl38.6 coding upstream 81720 38257766 ~ 38291952 (+)
XLOC_017528 ccl38a.4 coding upstream 87119 38285671 ~ 38286553 (+)
XLOC_017527 ccl38a.5 coding upstream 93280 38279523 ~ 38280392 (+)
XLOC_017525 ehd3 coding upstream 131813 38201644 ~ 38241859 (+)
XLOC_017531 coq8aa coding downstream 10837 38458084 ~ 38519126 (+)
XLOC_017532 znf512 coding downstream 77580 38524827 ~ 38538994 (+)
XLOC_017533 gtf3c2 coding downstream 96067 38543314 ~ 38584161 (+)
XLOC_017534 NA coding downstream 143261 38590508 ~ 38598879 (+)
XLOC_017535 si:ch211-243j20.2 coding downstream 173419 38620666 ~ 38670696 (+)
XLOC_017524 NA non-coding upstream 235249 38128054 ~ 38138423 (+)
XLOC_017520 NA non-coding upstream 531666 37836126 ~ 37842006 (+)
XLOC_017515 NA non-coding upstream 768547 37495088 ~ 37605125 (+)
XLOC_017511 BX855623.1 non-coding upstream 1092890 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 1166299 36925790 ~ 37207373 (+)
XLOC_017538 BX511178.1 non-coding downstream 327725 38774972 ~ 38775087 (+)
XLOC_017541 NA non-coding downstream 600812 39048059 ~ 39195117 (+)
XLOC_017544 AL845306.1 non-coding downstream 884722 39331969 ~ 39332092 (+)
XLOC_017552 NA non-coding downstream 1401464 39848711 ~ 39882360 (+)

Expression


Co-expression Network