XLOC_017529 (stum)


Basic Information

Item Value
gene id XLOC_017529
gene name stum
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38322444 ~ 38359333 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034833
CTACCGTTCAGTGCGCGCACTCGTTTCAACCTCTCGCTGGAGCTGCGCCTGATAGTGTCTAGTACACATAAACACGCGGATTTCTAGGTTTGTAATTAGTTTTAAAAGCTGGGAAATGGACCAGAAAGACACAGAGATGAACGAAAAAGGAGTTTCTTCTTCTACCAGCGGAGTTGTTGTTCAAGTGAGGGAGAAGAAAGGACCTTTGCGCGCTGCCATCCCTTATATGCCTTTCCCAGTTGCTGTCATCTGCCTGTTTCTCAACACATTTGTGCCCGGACTGGGTACATTCGTCTCGGCCTTCACGGTTCTGTGCGGTGCAAGGACAGATTTGCCCGACAGGCACATGTGTTGCGTCTTCTGGCTCAACATCGCAGCCGCCTTCATTCAGATCGTCACTGCTGTAGTCATGGTGGGCTGGATCATGAGCATATTTTGGGGAATGGATATGGTCATTCTCGCAACAGGCTACAGGGAGCAGTCCGTCCCTCAACAGCTCTGATTCCTGTTCTCCAGACCTAATGTTGAATGTGCAGCTTTCTCttgtgctgtctgtctgtctgtctggggCTTTGAGATGGAACCCTTGAGGCCTGGAGATTCAGAGGTCGATTACATGCCGATTCTCAGCCAAACTCCTTCTAGTCCTGTCAGGTACTACATTCAGAAGACCTGACTGTCGAGGGTCAGCAGAAAAATACGAACATTCTGTTAATATCACAAAAATCGCGAACGTTTTTGTGCCGAACACATTCTATGTCAAGGAAATTCAGTAGTCttaatgtatgtattatattgACCAATATACAGTATGAGCATTttcagtttgtaaaaatacatttataaacgaGCTTTGGGGTGAATGAAGTAGCTGAAAGaatcttaaaggaacagttcaccctaTAAAGAACACTACCTGtcttcatttacacacacttcaTGTACAATACATATTGGgtggactgtccctttaatatTTTGCGTCACACTGaacattataaatacatattttcatcTTGGTATTATAAGGTTTGTCAAAATGTTTTTAGTCACTTATTCTGACAACTTATTTACTAAATTCTTTTAGGTTCAGTACATTTCTTATTAAGAAAACTAATAGATTATTTCTACAAATTTGAACTGTAACTTGGTTTTATAAGGTTCTTTTTGTAGCCAGTCAGTGCTTTAAATGCAATTAAGGGGACCAATCGGGATCACCTCAGAAGCCAAGATGAGTAATTATACAATCATGTTTAAAGTCTTGCCACAGACTGAGAGTATCATAGTGTTgtgttg
>TCONS_00034834
CTACCGTTCAGTGCGCGCACTCGTTTCAACCTCTCGCTGGAGCTGCGCCTGATAGTGTCTAGTACACATAAACACGCGGATTTCTAGGTTTGTAATTAGTTTTAAAAGCTGGGAAATGGACCAGAAAGACACAGAGATGAACGAAAAAGGAGTTTCTTCTTCTACCAGCGGAGTTGTTGTTCAAGTGAGGGAGAAGAAAGGACCTTTGCGCGCTGCCATCCCTTATATGCCTTTCCCAGTTGCTGTCATCTGCCTGTTTCTCAACACATTTGTGCCCGGACTGGGTACATTCGTCTCGGCCTTCACGGTTCTGTGCGGTGCAAGGACAGATTTGCCCGACAGGCACATGTGTTGCGTCTTCTGGCTCAACATCGCAGCCGCCTTCATTCAGATCGTCACTGCTGTAGTCATGGTGGGCTGGATCATGAGCATATTTTGGGGAATGGATATGGTCATTCTCGCAAGCTACAGGGAGCAGTCCGTCCCTCAACAGCTCTGATTCCTGTTCTCCAGACCTAATGTTGAATGTGCAGCTTTCTCttgtgctgtctgtctgtctgtctggggCTTTGAGATGGAACCCTTGAGGCCTGGAGATTCAGAGGTCGATTACATGCCGATTCTCAGCCAAACTCCTTCTAGTCCTGTCAGGTACTACATTCAGAAGACCTGACTGTCGAGGGTCAGCAGAAAAATACGAACATTCTGTTAATATCACAAAAATCGCGAACGTTTTTGTGCCGAACACATTCTATGTCAAGGAAATTCAGTAGTCttaatgtatgtattatattgACCAATATACAGTATGAGCATTttcagtttgtaaaaatacatttataaacgaGCTTTGGGGTGAATGAAGTAGCTGAAAGaatcttaaaggaacagttcaccctaTAAAGAACACTACCTGtcttcatttacacacacttcaTGTACAATACATATTGGgtggactgtccctttaatatTTTGCGTCACACTGaacattataaatacatattttcatcTTGGTATTATAAGGTTTGTCAAAATGTTTTTAGTCACTTATTCTGACAACTTATTTACTAAATTCTTTTAGGTTCAGTACATTTCTTATTAAGAAAACTAATAGATTATTTCTACAAATTTGAACTGTAACTTGGTTTTATAAGGTTCTTTTTGTAGCCAGTCAGTGCTTTAAATGCAATTAAGGGGACCAATCGGGATCACCTCAGAAGCCAAGATGAGTAATTATACAATCATGTTTAAAGTCTTGCCACAGACTGAGAGTATCATAGTGTTgtgttgaaaaatgaaaaaa
>TCONS_00034835
CGCACTCGTTTCAACCTCTCGCTGGAGCTGCGCCTGATAGTGTCTAGTACACATAAACACGCGGATTTCTAGGTTTGTAATTAGTTTTAAAAGCTGGGAAATGGACCAGAAAGACACAGAGATGAACGAAAAAGGAGTTTCTTCTTCTACCAGCGGAGTTGTTGTTCAAGTGAGGGAGAAGAAAGGACCTTTGCGCGCTGCCATCCCTTATATGCCTTTCCCAGTTGCTGTCATCTGCCTGTTTCTCAACACATTTGTGCCCGGACTGGGTACATTCGTCTCGGCCTTCACGGTTCTGTGCGGTGCAAGGACAGATTTGCCCGACAGGCACATGTGTTGCGTCTTCTGGCTCAACATCGCAGCCGCCTTCATTCAGATCGTCACTGCTGTAGTCATGGTGGGCTGGATCATGAGCATATTTTGGGGAATGGATATGGTCATTCTCGCAATCTCTGAAGGTAGGTGAATCTAATGTTGGACCTTTGTCATAACTAATACTCAGACCTGTCTCAAAAAGAACACTTTTAACATTTCAGAAAAGCACGTAAACTTTGTCCACATTCATACTGCAaatacacag
>TCONS_00034836
AGCTGCGCCTGATAGTGTCTAGTACACATAAACACGCGGATTTCTAGGTTTGTAATTAGTTTTAAAAGCTGGGAAATGGACCAGAAAGACACAGAGATGAACGAAAAAGGAGTTTCTTCTTCTACCAGCGGAGTTGTTGTTCAAGTGAGGGAGAAGAAAGGACCTTTGCGCGCTGCCATCCCTTATATGCCTTTCCCAGTTGCTGTCATCTGCCTGTTTCTCAACACATTTGTGCCCGGACTGGGTACATTCGTCTCGGCCTTCACGGTTCTGTGCGGTGCAAGGACAGATTTGCCCGACAGGCACATGTGTTGCGTCTTCTGGCTCAACATCGCAGCCGCCTTCATTCAGATCGTCACTGCTGTAGTCATGGTGGGCTGGATCATGAGCATATTTTGGGGAATGGATATGGTCATTCTCGCAAACGAACGTCGGGCACACTGGATTTAAAAACGACATGAGTAAACGACAACAGATTTGCCATGTTTTTCTGAACTGCCCCTTTGACTTGCATAGTAAGTGTAAGAGAAGATGACAGGA

Function

symbol description
stum Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human STUM (stum, mechanosensory transduction mediator homolog).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-164 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human STUM (stum, mechanosensory transduction mediator homolog).

Ensembl:

ensembl_id ENSDARG00000041915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034833 False 1296 mRNA 0.42 3 38322444 38359320
TCONS_00034834 False 1306 mRNA 0.41 3 38322444 38359333
TCONS_00034835 False 580 mRNA 0.46 3 38322459 38352634
TCONS_00034836 True 540 mRNA 0.47 3 38322484 38352086

Neighbor

gene id symbol gene type direction distance location
XLOC_017526 ccl38.6 coding upstream 30492 38257766 ~ 38291952 (+)
XLOC_017528 ccl38a.4 coding upstream 35891 38285671 ~ 38286553 (+)
XLOC_017527 ccl38a.5 coding upstream 42052 38279523 ~ 38280392 (+)
XLOC_017525 ehd3 coding upstream 80585 38201644 ~ 38241859 (+)
XLOC_017524 NA coding upstream 184021 38128054 ~ 38138423 (+)
XLOC_017530 NA coding downstream 14339 38373672 ~ 38447247 (+)
XLOC_017531 coq8aa coding downstream 98751 38458084 ~ 38519126 (+)
XLOC_017532 znf512 coding downstream 165494 38524827 ~ 38538994 (+)
XLOC_017533 gtf3c2 coding downstream 183981 38543314 ~ 38584161 (+)
XLOC_017534 NA coding downstream 231175 38590508 ~ 38598879 (+)
XLOC_017520 NA non-coding upstream 480438 37836126 ~ 37842006 (+)
XLOC_017515 NA non-coding upstream 717319 37495088 ~ 37605125 (+)
XLOC_017511 BX855623.1 non-coding upstream 1041662 37256654 ~ 37280782 (+)
XLOC_017510 NA non-coding upstream 1115071 36925790 ~ 37207373 (+)
XLOC_017538 BX511178.1 non-coding downstream 415639 38774972 ~ 38775087 (+)
XLOC_017541 NA non-coding downstream 688726 39048059 ~ 39195117 (+)
XLOC_017544 AL845306.1 non-coding downstream 972636 39331969 ~ 39332092 (+)

Expression


Co-expression Network